PPGR - Gene Detail

Basic Information

Gene ID	gene-CEY00_Acc18776 View in Genome Browser
Position	CM009669.1:23247252-23255697 (+) 8445bp
Gene Type	gene
Gene Description (Protein Product)	Ubiquitin carboxyl-terminal hydrolase
Organism	Actinidia chinensis
Also AS	AT5G10790CEY00_Acc18776

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-CEY00_Acc30527 Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery

gene-CEY00_Acc29247 TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription

gene-CEY00_Acc22331 Transcription initiation factor TFIID subunit

Regulatory gene

gene-CEY00_Acc00463 Zinc finger protein

gene-CEY00_Acc00755 ZINC FINGER protein

gene-CEY00_Acc00850 Zinc finger AN1 and C2H2 domain-containing stress-associated protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

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