Basic Information
Gene ID
AmTr_scaff00001.117.v1.0.g
Position
AmTr_scaff00001:2011944-2017806 (-)
5862bp
Gene Type
gene
Gene Description (Protein Product)
RNA recognition motif
Organism
Also AS AT4G35785AMTR_s00001p00140760

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00068.93.v1.0.g splicing factor
AmTr_scaff00013.152.v1.0.g pre-mRNA-splicing factor
AmTr_scaff00176.28.v1.0.g serine arginine-rich splicing factor
Regulatory gene
AmTr_scaff00001.217.v1.0.g Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters
AmTr_scaff00001.432.v1.0.g Transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.