PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	AmTr_scaff00002.509.v1.0.g View in Genome Browser
Position	AmTr_scaff00002:8701479-8711158 (-) 9679bp
Gene Type	gene
Gene Description (Protein Product)	F-box LRR-repeat protein
Organism	Amborella trichopoda
Also AS	AT3G54650AMTR_s00002p00266430

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	AmTr_scaff00029.181.v1.0.g Belongs to the SKP1 family AmTr_scaff00017.69.v1.0.g Belongs to the protein kinase superfamily AmTr_scaff01954.1.v1.0.g (cyclin-dependent kinase) inhibitor
Regulatory gene	AmTr_scaff00001.525.v1.0.g transcription factor AmTr_scaff00001.72.v1.0.g transcription factor AmTr_scaff00002.587.v1.0.g ZINC FINGER protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000151	ubiquitin ligase complex	CC
GO:0000278	mitotic cell cycle	BP
GO:0000280	nuclear division	BP
GO:0001673	male germ cell nucleus	CC
GO:0003006	developmental process involved in reproduction	BP
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006508	proteolysis	BP
GO:0006511	ubiquitin-dependent protein catabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007049	cell cycle	BP
GO:0007275	multicellular organism development	BP
GO:0007276	gamete generation	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009555	pollen development	BP
GO:0009790	embryo development	BP
GO:0009791	post-embryonic development	BP
GO:0009793	embryo development ending in seed dormancy	BP
GO:0009987	cellular process	BP
GO:0010154	fruit development	BP
GO:0010498	proteasomal protein catabolic process	BP
GO:0016043	cellular component organization	BP
GO:0019005	SCF ubiquitin ligase complex	CC
GO:0019538	protein metabolic process	BP
GO:0019941	modification-dependent protein catabolic process	BP
GO:0019953	sexual reproduction	BP
GO:0022402	cell cycle process	BP
GO:0022412	cellular process involved in reproduction in multicellular organism	BP
GO:0022414	reproductive process	BP
GO:0030163	protein catabolic process	BP
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	BP
GO:0031461	cullin-RING ubiquitin ligase complex	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0032991	protein-containing complex	CC
GO:0043073	germ cell nucleus	CC
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043632	modification-dependent macromolecule catabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044257	protein catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0048229	gametophyte development	BP
GO:0048232	male gamete generation	BP
GO:0048285	organelle fission	BP
GO:0048316	seed development	BP
GO:0048608	reproductive structure development	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0051603	proteolysis involved in protein catabolic process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0055047	generative cell mitosis	BP
GO:0061458	reproductive system development	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0140014	mitotic nuclear division	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1902494	catalytic complex	CC
GO:1903047	mitotic cell cycle process	BP
GO:1990234	transferase complex	CC