Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Basic Information
Gene ID
AmTr_scaff00002.633.v1.0.g
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Position
AmTr_scaff00002:10978880-10991046 (+)
12166bp
Gene Type
gene
Gene Description (Protein Product)
Pseudouridine synthase
Organism
Amborella trichopoda
Also AS AT3G04820AMTR_s00002p00271620

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00003.353.v1.0.g H ACA ribonucleoprotein complex non-core subunit
AmTr_scaff00003.27.v1.0.g ribonucleases P MRP protein subunit
AmTr_scaff00004.42.v1.0.g Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1
Regulatory gene
AmTr_scaff00002.228.v1.0.g Homeobox-leucine zipper protein
AmTr_scaff00002.589.v1.0.g Heat Stress Transcription Factor
AmTr_scaff00002.637.v1.0.g tesmin tso1-like cxc

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail