Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00027.162.v1.0.g
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Position
AmTr_scaff00027:6142743-6145160 (-)
2417bp
Gene Type
gene
Gene Description (Protein Product)
TPR repeat-containing protein
Organism
Amborella trichopoda
Also AS AT1G05150AMTR_s00027p00248120

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00101.104.v1.0.g Coiled-coil regions of plant-specific actin-binding protein
AmTr_scaff00027.40.v1.0.g Ribosomal L40e family
AmTr_scaff00101.25.v1.0.g ubiquitin-NEDD8-like protein
Regulatory gene
AmTr_scaff00002.587.v1.0.g ZINC FINGER protein
AmTr_scaff00002.637.v1.0.g tesmin tso1-like cxc
AmTr_scaff00006.141.v1.0.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005794 Golgi apparatus CC
GO:0005802 trans-Golgi network CC
GO:0005886 plasma membrane CC
GO:0005911 cell-cell junction CC
GO:0009506 plasmodesma CC
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0030054 cell junction CC
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0055044 symplast CC
GO:0071944 cell periphery CC
GO:0097708 intracellular vesicle CC
GO:0098791 Golgi apparatus subcompartment CC