Basic Information
Gene ID
AmTr_scaff00036.61.v1.0.g
Position
AmTr_scaff00036:1962501-1963433 (+)
932bp
Gene Type
gene
Gene Description (Protein Product)
TRAF-type zinc finger
Organism
Also AS AT3G11950AMTR_s00036p00138480

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00068.98.v1.0.g Homogentisate phytyltransferase 2
AmTr_scaff00086.58.v1.0.g Belongs to the FPP GGPP synthase family
AmTr_scaff00085.99.v1.0.g Involved in the biosynthesis of phylloquinone (vitamin K1). Methyltransferase required for the conversion of 2-phytyl- 1,4-beta-naphthoquinol to phylloquinol
Regulatory gene
AmTr_scaff00002.637.v1.0.g tesmin tso1-like cxc
AmTr_scaff00006.141.v1.0.g dof zinc finger protein
AmTr_scaff00006.175.v1.0.g bpc6, bbr bpc6, atbpc6 atbpc6

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00130 Ubiquinone and other terpenoid-quinone biosynthesis Ubiquinone (UQ), also called coenzyme Q, and plastoquinone (PQ) are electron carriers in oxidative phosphorylation and photosynthesis, respectively. The quinoid nucleus of ubiquinone is derived from the shikimate pathway; 4-hydroxybenzoate is directly formed from chorismate in bacteria, while it can be formed from either chorismate or tyrosine in yeast. The following biosynthesis of terpenoid moiety involves reactions of prenylation, decarboxylation, and three hydroxylations alternating with three methylations. The order of these reactions are somewhat different between bacteria and yeast. Phylloquinone (vitamin K1), menaquinone (vitamin K2), and tocopherol (vitamin E) are fat-soluble vitamins. Phylloquinone is a compound present in all photosynthetic plants serving as a cofactor for photosystem I-mediated electron transport. Menaquinone is an obligatory component of the electron-transfer pathway in bacteria.