Basic Information
Gene ID
AmTr_scaff00040.71.v1.0.g
Position
AmTr_scaff00040:1279173-1283368 (-)
4195bp
Gene Type
gene
Gene Description (Protein Product)
ubiquitin-60S ribosomal protein
Organism
Also AS AT3G52590AMTR_s00040p00104050

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00109.15.v1.0.g binds to the 23S rRNA
AmTr_scaff00069.192.v1.0.g 60S ribosomal Protein
AmTr_scaff00071.180.v1.0.g Belongs to the eukaryotic ribosomal protein P1 P2 family
Regulatory gene
AmTr_scaff00001.432.v1.0.g Transcription factor
AmTr_scaff00001.504.v1.0.g transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map04120 Ubiquitin mediated proteolysis Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
map03010 Ribosome -