Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00048.159.v1.0.g
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Position
AmTr_scaff00048:3528505-3539480 (+)
10975bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Organism
Amborella trichopoda
Also AS AT5G45380AMTR_s00048p00195780

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00132.22.v1.0.g Permease
AmTr_scaff00101.55.v1.0.g Biotin carboxylase
AmTr_scaff00095.44.v1.0.g L-2-hydroxyglutarate dehydrogenase
Regulatory gene
AmTr_scaff00001.192.v1.0.g NAC transcription factor
AmTr_scaff00001.217.v1.0.g Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters
AmTr_scaff00001.280.v1.0.g NAC domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005215 transporter activity MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0005887 plasma membrane CC
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006812 monoatomic cation transport BP
GO:0006950 response to stress BP
GO:0006995 cellular response to nitrogen starvation BP
GO:0007154 cell communication BP
GO:0008150 biological_process BP
GO:0008324 monoatomic cation transmembrane transporter activity MF
GO:0008519 ammonium transmembrane transporter activity MF
GO:0009267 cellular response to starvation BP
GO:0009605 response to external stimulus BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0015075 monoatomic ion transmembrane transporter activity MF
GO:0015101 organic cation transmembrane transporter activity MF
GO:0015203 polyamine transmembrane transporter activity MF
GO:0015204 urea transmembrane transporter activity MF
GO:0015291 secondary active transmembrane transporter activity MF
GO:0015293 symporter activity MF
GO:0015489 putrescine transmembrane transporter activity MF
GO:0015606 spermidine transmembrane transporter activity MF
GO:0015695 organic cation transport BP
GO:0015696 ammonium transmembrane transport BP
GO:0015840 urea transport BP
GO:0015846 polyamine transport BP
GO:0015847 putrescine transport BP
GO:0015848 spermidine transport BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0019755 one-carbon compound transport BP
GO:0022804 active transmembrane transporter activity MF
GO:0022857 transmembrane transporter activity MF
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031226 obsolete intrinsic component of plasma membrane CC
GO:0031667 response to nutrient levels BP
GO:0031668 cellular response to extracellular stimulus BP
GO:0031669 cellular response to nutrient levels BP
GO:0033554 cellular response to stress BP
GO:0034220 monoatomic ion transmembrane transport BP
GO:0042594 response to starvation BP
GO:0042886 amide transport BP
GO:0042887 amide transmembrane transporter activity MF
GO:0043562 cellular response to nitrogen levels BP
GO:0044425 obsolete membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051716 cellular response to stimulus BP
GO:0055085 transmembrane transport BP
GO:0071496 cellular response to external stimulus BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071918 urea transmembrane transport BP
GO:0071944 cell periphery CC
GO:0072488 ammonium transmembrane transport BP
GO:0098655 monoatomic cation transmembrane transport BP
GO:1902047 polyamine transmembrane transport BP
GO:1903711 spermidine transmembrane transport BP