PPGR - Gene Detail

Basic Information

Gene ID	AmTr_scaff00049.46.v1.0.g View in Genome Browser
Position	AmTr_scaff00049:784832-793303 (+) 8471bp
Gene Type	gene
Gene Description (Protein Product)	metalloendopeptidase activity
Organism	Amborella trichopoda
Also AS	AT1G67700AMTR_s00049p00073250

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

AmTr_scaff00450.2.v1.0.g Protein disulfide-isomerase LQY1

AmTr_scaff01196.2.v1.0.g One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

AmTr_scaff04036.1.v1.0.g One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Regulatory gene

AmTr_scaff00006.141.v1.0.g dof zinc finger protein

AmTr_scaff00006.175.v1.0.g bpc6, bbr bpc6, atbpc6 atbpc6

AmTr_scaff00010.496.v1.0.g Cyclic dof factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004175	endopeptidase activity	MF
GO:0004222	metalloendopeptidase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006508	proteolysis	BP
GO:0006518	peptide metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008233	peptidase activity	MF
GO:0008237	metallopeptidase activity	MF
GO:0009507	chloroplast	CC
GO:0009526	plastid envelope	CC
GO:0009534	chloroplast thylakoid	CC
GO:0009536	plastid	CC
GO:0009579	thylakoid	CC
GO:0009941	chloroplast envelope	CC
GO:0009987	cellular process	BP
GO:0016787	hydrolase activity	MF
GO:0019538	protein metabolic process	BP
GO:0031967	organelle envelope	CC
GO:0031975	envelope	CC
GO:0031976	plastid thylakoid	CC
GO:0031984	organelle subcompartment	CC
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043603	amide metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0070011	peptidase activity	MF
GO:0071704	organic substance metabolic process	BP
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901564	organonitrogen compound metabolic process	BP