Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00054.30.v1.0.g
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Position
AmTr_scaff00054:1071890-1072345 (-)
455bp
Gene Type
gene
Gene Description (Protein Product)
Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
Organism
Amborella trichopoda
Also AS AT4G18130AMTR_s00054p00091550

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff02137.1.v1.0.g atcry1,blu1,cry1,hy4,oop2
AmTr_scaff00074.24.v1.0.g E3 ubiquitin-protein ligase
AmTr_scaff00148.69.v1.0.g atcry1,blu1,cry1,hy4,oop2
Regulatory gene
AmTr_scaff00001.382.v1.0.g transcription factor
AmTr_scaff00002.534.v1.0.g endonuclease activity
AmTr_scaff00006.141.v1.0.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0009657 plastid organization BP
GO:0009658 chloroplast organization BP
GO:0009902 chloroplast relocation BP
GO:0009903 chloroplast avoidance movement BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0019750 chloroplast localization BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051644 plastid localization BP
GO:0051649 establishment of localization in cell BP
GO:0051656 establishment of organelle localization BP
GO:0051667 establishment of plastid localization BP
GO:0071840 cellular component organization or biogenesis BP
KEGG Term Name Description
map04712 Circadian rhythm - plant -