Basic Information
Gene ID
AmTr_scaff00056.135.v1.0.g
Position
AmTr_scaff00056:2437663-2450549 (+)
12886bp
Gene Type
gene
Gene Description (Protein Product)
May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins
Organism
Also AS AT4G29330AMTR_s00056p00158870

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00062.96.v1.0.g May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins
AmTr_scaff00129.24.v1.0.g Belongs to the ubiquitin-conjugating enzyme family
AmTr_scaff00067.140.v1.0.g Belongs to the synaptobrevin family
Regulatory gene
AmTr_scaff00006.175.v1.0.g bpc6, bbr bpc6, atbpc6 atbpc6
AmTr_scaff00024.47.v1.0.g Protein BASIC PENTACYSTEINE2-like
AmTr_scaff00185.21.v1.0.g Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map04141 Protein processing in endoplasmic reticulum The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.