Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00059.43.v1.0.g
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Position
AmTr_scaff00059:695397-713789 (-)
18392bp
Gene Type
gene
Gene Description (Protein Product)
U1 small nuclear ribonucleoprotein 70
Organism
Amborella trichopoda
Also AS AT3G50670AMTR_s00059p00067090

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00061.104.v1.0.g Small nuclear ribonucleoprotein
AmTr_scaff00179.7.v1.0.g at prp39-2,prp39-2
AmTr_scaff00100.7.v1.0.g Serine arginine-rich splicing factor
Regulatory gene
AmTr_scaff00001.192.v1.0.g NAC transcription factor
AmTr_scaff00001.217.v1.0.g Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters
AmTr_scaff00001.280.v1.0.g NAC domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.