Basic Information
Gene ID
AmTr_scaff00059.91.v1.0.g
Position
AmTr_scaff00059:1525502-1536105 (+)
10603bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor 3B subunit
Organism
Also AS AT2G18510AMTR_s00059p00117370

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00110.39.v1.0.g Pre-mRNA-splicing factor ATP-dependent RNA helicase
AmTr_scaff00077.240.v1.0.g Splicing factor 3B subunit
AmTr_scaff00176.14.v1.0.g splicing factor 3A subunit
Regulatory gene
AmTr_scaff00002.587.v1.0.g ZINC FINGER protein
AmTr_scaff00002.637.v1.0.g tesmin tso1-like cxc
AmTr_scaff00006.175.v1.0.g bpc6, bbr bpc6, atbpc6 atbpc6

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.