PPGR - Gene Detail

Basic Information

Gene ID	AmTr_scaff00061.204.v1.0.g View in Genome Browser
Position	AmTr_scaff00061:3100583-3122483 (+) 21900bp
Gene Type	gene
Gene Description (Protein Product)	"Ribonuclease E G-like protein
Organism	Amborella trichopoda
Also AS	AT2G04270AMTR_s00061p00182640

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

AmTr_scaff00120.36.v1.0.g Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions

AmTr_scaff00147.61.v1.0.g NUMOD3 motif (2 copies)

AmTr_scaff00211.5.v1.0.g ribosome-binding factor A

Regulatory gene

AmTr_scaff00002.228.v1.0.g Homeobox-leucine zipper protein

AmTr_scaff00002.587.v1.0.g ZINC FINGER protein

AmTr_scaff00002.671.v1.0.g B3 domain-containing protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004518	nuclease activity	MF
GO:0004519	endonuclease activity	MF
GO:0004521	RNA endonuclease activity	MF
GO:0004540	ribonuclease activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006397	mRNA processing	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009657	plastid organization	BP
GO:0009658	chloroplast organization	BP
GO:0009987	cellular process	BP
GO:0010239	chloroplast mRNA processing	BP
GO:0010467	gene expression	BP
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016071	mRNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0031425	chloroplast RNA processing	BP
GO:0034470	ncRNA processing	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042254	ribosome biogenesis	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090305	nucleic acid phosphodiester bond hydrolysis	BP
GO:0090501	RNA phosphodiester bond hydrolysis	BP
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	BP
GO:0140098	catalytic activity, acting on RNA	MF
GO:1901259	chloroplast rRNA processing	BP
GO:1901360	organic cyclic compound metabolic process	BP