Basic Information
Gene ID
AmTr_scaff00061.230.v1.0.g
Position
AmTr_scaff00061:3554765-3561023 (+)
6258bp
Gene Type
gene
Gene Description (Protein Product)
Long chain acyl-CoA synthetase
Organism
Also AS AT2G04350AMTR_s00061p00196410

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00159.1.v1.0.g Long chain acyl-CoA synthetase
AmTr_scaff00142.75.v1.0.g Plays an essential role in chain termination during de novo fatty acid synthesis
AmTr_scaff00160.27.v1.0.g Triacylglycerol lipase
Regulatory gene
AmTr_scaff00001.192.v1.0.g NAC transcription factor
AmTr_scaff00001.280.v1.0.g NAC domain-containing protein
AmTr_scaff00002.587.v1.0.g ZINC FINGER protein

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000902 cell morphogenesis BP
GO:0000904 cell morphogenesis involved in differentiation BP
GO:0001558 regulation of cell growth BP
GO:0001676 long-chain fatty acid metabolic process BP
GO:0003002 regionalization BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004467 long-chain fatty acid-CoA ligase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005740 mitochondrial envelope CC
GO:0005777 peroxisome CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0005794 Golgi apparatus CC
GO:0005811 lipid droplet CC
GO:0006082 organic acid metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006163 purine nucleotide metabolic process BP
GO:0006164 purine nucleotide biosynthetic process BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006629 lipid metabolic process BP
GO:0006631 fatty acid metabolic process BP
GO:0006633 fatty acid biosynthetic process BP
GO:0006637 acyl-CoA metabolic process BP
GO:0006638 neutral lipid metabolic process BP
GO:0006639 acylglycerol metabolic process BP
GO:0006641 triglyceride metabolic process BP
GO:0006644 phospholipid metabolic process BP
GO:0006650 glycerophospholipid metabolic process BP
GO:0006655 phosphatidylglycerol biosynthetic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006790 sulfur compound metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006820 monoatomic anion transport BP
GO:0006869 lipid transport BP
GO:0006928 obsolete movement of cell or subcellular component BP
GO:0006935 chemotaxis BP
GO:0007154 cell communication BP
GO:0007267 cell-cell signaling BP
GO:0007268 chemical synaptic transmission BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0007399 nervous system development BP
GO:0007409 axonogenesis BP
GO:0007411 axon guidance BP
GO:0007417 central nervous system development BP
GO:0007420 brain development BP
GO:0007565 female pregnancy BP
GO:0007584 response to nutrient BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008582 regulation of synaptic assembly at neuromuscular junction BP
GO:0008610 lipid biosynthetic process BP
GO:0008654 phospholipid biosynthetic process BP
GO:0009058 biosynthetic process BP
GO:0009108 obsolete coenzyme biosynthetic process BP
GO:0009117 nucleotide metabolic process BP
GO:0009150 purine ribonucleotide metabolic process BP
GO:0009152 purine ribonucleotide biosynthetic process BP
GO:0009165 nucleotide biosynthetic process BP
GO:0009259 ribonucleotide metabolic process BP
GO:0009260 ribonucleotide biosynthetic process BP
GO:0009507 chloroplast CC
GO:0009526 plastid envelope CC
GO:0009536 plastid CC
GO:0009605 response to external stimulus BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009792 embryo development ending in birth or egg hatching BP
GO:0009889 regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009941 chloroplast envelope CC
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010033 response to organic substance BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010562 positive regulation of phosphorus metabolic process BP
GO:0010565 regulation of cellular ketone metabolic process BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0010876 lipid localization BP
GO:0010883 regulation of lipid storage BP
GO:0010884 positive regulation of lipid storage BP
GO:0010889 regulation of sequestering of triglyceride BP
GO:0010890 positive regulation of sequestering of triglyceride BP
GO:0012505 endomembrane system CC
GO:0014070 response to organic cyclic compound BP
GO:0015645 fatty acid ligase activity MF
GO:0015711 organic anion transport BP
GO:0015718 monocarboxylic acid transport BP
GO:0015849 organic acid transport BP
GO:0015908 fatty acid transport BP
GO:0015909 long-chain fatty acid transport BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016053 organic acid biosynthetic process BP
GO:0016192 vesicle-mediated transport BP
GO:0016358 dendrite development BP
GO:0016405 CoA-ligase activity MF
GO:0016482 cytosolic transport BP
GO:0016874 ligase activity MF
GO:0016877 ligase activity, forming carbon-sulfur bonds MF
GO:0016878 acid-thiol ligase activity MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019216 regulation of lipid metabolic process BP
GO:0019217 regulation of fatty acid metabolic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019432 triglyceride biosynthetic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019693 ribose phosphate metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0019899 enzyme binding MF
GO:0019900 kinase binding MF
GO:0019901 protein kinase binding MF
GO:0019904 protein domain specific binding MF
GO:0022008 neurogenesis BP
GO:0022414 reproductive process BP
GO:0022607 cellular component assembly BP
GO:0023051 regulation of signaling BP
GO:0023052 signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030030 cell projection organization BP
GO:0030154 cell differentiation BP
GO:0030182 neuron differentiation BP
GO:0030307 positive regulation of cell growth BP
GO:0030424 axon CC
GO:0030510 regulation of BMP signaling pathway BP
GO:0030514 negative regulation of BMP signaling pathway BP
GO:0031090 organelle membrane CC
GO:0031175 neuron projection development BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031667 response to nutrient levels BP
GO:0031957 very long-chain fatty acid-CoA ligase activity MF
GO:0031966 mitochondrial membrane CC
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0031984 organelle subcompartment CC
GO:0032303 regulation of icosanoid secretion BP
GO:0032304 negative regulation of icosanoid secretion BP
GO:0032306 regulation of prostaglandin secretion BP
GO:0032307 negative regulation of prostaglandin secretion BP
GO:0032368 regulation of lipid transport BP
GO:0032369 negative regulation of lipid transport BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0032787 monocarboxylic acid metabolic process BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0032890 regulation of organic acid transport BP
GO:0032891 negative regulation of organic acid transport BP
GO:0032989 cellular component morphogenesis BP
GO:0032990 cell part morphogenesis BP
GO:0033036 macromolecule localization BP
GO:0033865 nucleoside bisphosphate metabolic process BP
GO:0033866 nucleoside bisphosphate biosynthetic process BP
GO:0033875 ribonucleoside bisphosphate metabolic process BP
GO:0034030 ribonucleoside bisphosphate biosynthetic process BP
GO:0034032 purine nucleoside bisphosphate metabolic process BP
GO:0034033 purine nucleoside bisphosphate biosynthetic process BP
GO:0034097 response to cytokine BP
GO:0034377 plasma lipoprotein particle assembly BP
GO:0034379 very-low-density lipoprotein particle assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0035282 segmentation BP
GO:0035336 long-chain fatty-acyl-CoA metabolic process BP
GO:0035337 fatty-acyl-CoA metabolic process BP
GO:0035338 long-chain fatty-acyl-CoA biosynthetic process BP
GO:0035383 thioester metabolic process BP
GO:0035384 thioester biosynthetic process BP
GO:0036477 somatodendritic compartment CC
GO:0040008 regulation of growth BP
GO:0040011 locomotion BP
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0042221 response to chemical BP
GO:0042330 taxis BP
GO:0042579 microbody CC
GO:0042995 cell projection CC
GO:0042996 regulation of Golgi to plasma membrane protein transport BP
GO:0042998 positive regulation of Golgi to plasma membrane protein transport BP
GO:0043005 neuron projection CC
GO:0043025 neuronal cell body CC
GO:0043062 extracellular structure organization BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043269 regulation of monoatomic ion transport BP
GO:0043271 negative regulation of monoatomic ion transport BP
GO:0043436 oxoacid metabolic process BP
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0043933 protein-containing complex organization BP
GO:0044070 regulation of monoatomic anion transport BP
GO:0044085 cellular component biogenesis BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044232 organelle membrane contact site CC
GO:0044233 mitochondria-associated endoplasmic reticulum membrane CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044255 cellular lipid metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044272 sulfur compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044297 cell body CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044539 long-chain fatty acid import into cell BP
GO:0044703 multi-organism reproductive process BP
GO:0044706 multi-multicellular organism process BP
GO:0045017 glycerolipid biosynthetic process BP
GO:0045834 positive regulation of lipid metabolic process BP
GO:0045886 negative regulation of synaptic assembly at neuromuscular junction BP
GO:0045926 negative regulation of growth BP
GO:0045927 positive regulation of growth BP
GO:0045937 positive regulation of phosphate metabolic process BP
GO:0046390 ribose phosphate biosynthetic process BP
GO:0046394 carboxylic acid biosynthetic process BP
GO:0046460 neutral lipid biosynthetic process BP
GO:0046463 acylglycerol biosynthetic process BP
GO:0046471 phosphatidylglycerol metabolic process BP
GO:0046474 glycerophospholipid biosynthetic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046486 glycerolipid metabolic process BP
GO:0046889 positive regulation of lipid biosynthetic process BP
GO:0046890 regulation of lipid biosynthetic process BP
GO:0046907 intracellular transport BP
GO:0046942 carboxylic acid transport BP
GO:0046949 fatty-acyl-CoA biosynthetic process BP
GO:0047676 arachidonate-CoA ligase activity MF
GO:0048468 cell development BP
GO:0048471 perinuclear region of cytoplasm CC
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048638 regulation of developmental growth BP
GO:0048640 negative regulation of developmental growth BP
GO:0048666 neuron development BP
GO:0048667 cell morphogenesis involved in neuron differentiation BP
GO:0048699 generation of neurons BP
GO:0048731 system development BP
GO:0048812 neuron projection morphogenesis BP
GO:0048856 anatomical structure development BP
GO:0048858 cell projection morphogenesis BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050803 regulation of synapse structure or activity BP
GO:0050807 regulation of synapse organization BP
GO:0050896 response to stimulus BP
GO:0051046 regulation of secretion BP
GO:0051047 positive regulation of secretion BP
GO:0051048 negative regulation of secretion BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051051 negative regulation of transport BP
GO:0051093 negative regulation of developmental process BP
GO:0051128 regulation of cellular component organization BP
GO:0051129 negative regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051179 localization BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0051188 obsolete cofactor biosynthetic process BP
GO:0051222 positive regulation of protein transport BP
GO:0051223 regulation of protein transport BP
GO:0051234 establishment of localization BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051241 negative regulation of multicellular organismal process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0051704 obsolete multi-organism process BP
GO:0051960 regulation of nervous system development BP
GO:0051961 negative regulation of nervous system development BP
GO:0051963 regulation of synapse assembly BP
GO:0051964 negative regulation of synapse assembly BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0060136 embryonic process involved in female pregnancy BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060322 head development BP
GO:0060341 regulation of cellular localization BP
GO:0060627 regulation of vesicle-mediated transport BP
GO:0060996 dendritic spine development BP
GO:0061502 early endosome to recycling endosome transport BP
GO:0061564 axon development BP
GO:0062012 regulation of small molecule metabolic process BP
GO:0065003 protein-containing complex assembly BP
GO:0065005 protein-lipid complex assembly BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070201 regulation of establishment of protein localization BP
GO:0070672 response to interleukin-15 BP
GO:0071071 regulation of phospholipid biosynthetic process BP
GO:0071073 positive regulation of phospholipid biosynthetic process BP
GO:0071616 acyl-CoA biosynthetic process BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071825 protein-lipid complex subunit organization BP
GO:0071827 plasma lipoprotein particle organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072330 monocarboxylic acid biosynthetic process BP
GO:0072521 purine-containing compound metabolic process BP
GO:0072522 purine-containing compound biosynthetic process BP
GO:0080090 regulation of primary metabolic process BP
GO:0090087 regulation of peptide transport BP
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway BP
GO:0090101 negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway BP
GO:0090287 regulation of cellular response to growth factor stimulus BP
GO:0090288 negative regulation of cellular response to growth factor stimulus BP
GO:0090407 organophosphate biosynthetic process BP
GO:0090433 palmitoyl-CoA ligase activity MF
GO:0097006 regulation of plasma lipoprotein particle levels BP
GO:0097458 obsolete neuron part CC
GO:0097485 neuron projection guidance BP
GO:0098827 endoplasmic reticulum subcompartment CC
GO:0098916 anterograde trans-synaptic signaling BP
GO:0098927 vesicle-mediated transport between endosomal compartments BP
GO:0099536 synaptic signaling BP
GO:0099537 trans-synaptic signaling BP
GO:0120025 plasma membrane bounded cell projection CC
GO:0120036 plasma membrane bounded cell projection organization BP
GO:0120039 plasma membrane bounded cell projection morphogenesis BP
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901137 carbohydrate derivative biosynthetic process BP
GO:1901293 nucleoside phosphate biosynthetic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901568 fatty acid derivative metabolic process BP
GO:1901570 fatty acid derivative biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1903076 regulation of protein localization to plasma membrane BP
GO:1903078 positive regulation of protein localization to plasma membrane BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903725 regulation of phospholipid metabolic process BP
GO:1903727 positive regulation of phospholipid metabolic process BP
GO:1903792 negative regulation of monoatomic anion transport BP
GO:1903827 regulation of protein localization BP
GO:1903829 positive regulation of protein localization BP
GO:1904375 regulation of protein localization to cell periphery BP
GO:1904377 positive regulation of protein localization to cell periphery BP
GO:1904396 regulation of neuromuscular junction development BP
GO:1904397 negative regulation of neuromuscular junction development BP
GO:1904951 positive regulation of establishment of protein localization BP
GO:1905475 regulation of protein localization to membrane BP
GO:1905477 positive regulation of protein localization to membrane BP
GO:1905809 negative regulation of synapse organization BP
GO:1905952 regulation of lipid localization BP
GO:1905953 negative regulation of lipid localization BP
GO:1905954 positive regulation of lipid localization BP
GO:2000026 regulation of multicellular organismal development BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000191 regulation of fatty acid transport BP
GO:2000192 negative regulation of fatty acid transport BP
GO:2001141 regulation of RNA biosynthetic process BP
GO:2001245 regulation of phosphatidylcholine biosynthetic process BP
GO:2001247 positive regulation of phosphatidylcholine biosynthetic process BP
KEGG Term Name Description
map04146 Peroxisome Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
map01100 Metabolic pathways -
map00071 Fatty acid metabolism -
map00061 Fatty acid biosynthesis -