Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Basic Information
Gene ID
AmTr_scaff00069.60.v1.0.g
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Position
AmTr_scaff00069:1139580-1156684 (-)
17104bp
Gene Type
gene
Gene Description (Protein Product)
Nucleolar protein
Organism
Amborella trichopoda
Also AS AT3G56990AMTR_s00069p00095730

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00111.58.v1.0.g protein DDB_G0270496 isoform X1
AmTr_scaff00078.125.v1.0.g RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation
AmTr_scaff00096.16.v1.0.g Involved in nucleolar processing of pre-18S ribosomal RNA
Regulatory gene
AmTr_scaff00006.175.v1.0.g bpc6, bbr bpc6, atbpc6 atbpc6
AmTr_scaff00024.47.v1.0.g Protein BASIC PENTACYSTEINE2-like
AmTr_scaff00185.21.v1.0.g Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail