Basic Information
Gene ID
AmTr_scaff00070.107.v1.0.g
Position
AmTr_scaff00070:2882301-2882909 (+)
608bp
Gene Type
gene
Gene Description (Protein Product)
CCR4-associated factor 1 homolog
Organism
Also AS AT1G80780AMTR_s00070p00175430

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00171.4.v1.0.g NOT transcription complex subunit VIP2
AmTr_scaff00106.104.v1.0.g Ccr4-not transcription complex
AmTr_scaff00078.126.v1.0.g Binds the poly(A) tail of mRNA
Regulatory gene
AmTr_scaff00006.175.v1.0.g bpc6, bbr bpc6, atbpc6 atbpc6
AmTr_scaff00024.47.v1.0.g Protein BASIC PENTACYSTEINE2-like
AmTr_scaff00185.21.v1.0.g Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.