Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00073.51.v1.0.g
View in Genome Browser
Position
AmTr_scaff00073:2818752-2898071 (+)
79319bp
Gene Type
gene
Gene Description (Protein Product)
phosphoglycerate
Organism
Amborella trichopoda
Also AS AT3G50520AMTR_s00073p00173240

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00111.63.v1.0.g Belongs to the GPI family
AmTr_scaff00135.20.v1.0.g Belongs to the GPI family
AmTr_scaff00085.3.v1.0.g Transaldolase
Regulatory gene
AmTr_scaff00002.490.v1.0.g WRKY Transcription Factor
AmTr_scaff00003.226.v1.0.g Transcription factor
AmTr_scaff00004.51.v1.0.g WRKY DNA -binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004647 L-phosphoserine phosphatase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006082 organic acid metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006563 L-serine metabolic process BP
GO:0006564 L-serine biosynthetic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008652 amino acid biosynthetic process BP
GO:0009058 biosynthetic process BP
GO:0009069 serine family amino acid metabolic process BP
GO:0009070 serine family amino acid biosynthetic process BP
GO:0009987 cellular process BP
GO:0016053 organic acid biosynthetic process BP
GO:0016311 dephosphorylation BP
GO:0016787 hydrolase activity MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0016791 phosphatase activity MF
GO:0017144 xenobiotic metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0042578 phosphoric ester hydrolase activity MF
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046394 carboxylic acid biosynthetic process BP
GO:0046416 D-amino acid metabolic process BP
GO:0046437 D-amino acid biosynthetic process BP
GO:0070178 D-serine metabolic process BP
GO:0070179 D-serine biosynthetic process BP
GO:0071704 organic substance metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901607 alpha-amino acid biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00260 Glycine, serine and threonine metabolism Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
map00010 Glycolysis / Gluconeogenesis Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which often corresponds to operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].