Basic Information
Gene ID
AmTr_scaff00074.97.v1.0.g
Position
AmTr_scaff00074:2891915-2902342 (+)
10427bp
Gene Type
gene
Gene Description (Protein Product)
DNA-directed RNA polymerases IV and V subunit
Organism
Also AS AT4G15950AMTR_s00074p00175810

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00111.104.v1.0.g DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AmTr_scaff00626.1.v1.0.g rna polymerase
Regulatory gene
AmTr_scaff00001.217.v1.0.g Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters
AmTr_scaff00002.171.v1.0.g GATA transcription factor
AmTr_scaff00004.55.v1.0.g GATA transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
map03020 RNA polymerase -