PPGR - Gene Detail

Basic Information

Gene ID	AmTr_scaff00089.110.v1.0.g View in Genome Browser
Position	AmTr_scaff00089:3063446-3077374 (+) 13928bp
Gene Type	gene
Gene Description (Protein Product)	Isopentenyl-diphosphate delta-isomerase
Organism	Amborella trichopoda
Also AS	AT5G16440AMTR_s00089p00181680

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

AmTr_scaff00092.58.v1.0.g Belongs to the FPP GGPP synthase family

AmTr_scaff00095.58.v1.0.g Belongs to the IPP transferase family

AmTr_scaff00103.20.v1.0.g Belongs to the terpene synthase family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004452	isopentenyl-diphosphate delta-isomerase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005829	cytosol	CC
GO:0006629	lipid metabolic process	BP
GO:0006644	phospholipid metabolic process	BP
GO:0006720	isoprenoid metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008299	isoprenoid biosynthetic process	BP
GO:0008610	lipid biosynthetic process	BP
GO:0008654	phospholipid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009240	isopentenyl diphosphate biosynthetic process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009791	post-embryonic development	BP
GO:0009908	flower development	BP
GO:0009987	cellular process	BP
GO:0016853	isomerase activity	MF
GO:0016860	intramolecular oxidoreductase activity	MF
GO:0016863	intramolecular oxidoreductase activity, transposing C=C bonds	MF
GO:0019637	organophosphate metabolic process	BP
GO:0022414	reproductive process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046490	isopentenyl diphosphate metabolic process	BP
GO:0048367	shoot system development	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0061458	reproductive system development	BP
GO:0071704	organic substance metabolic process	BP
GO:0090407	organophosphate biosynthetic process	BP
GO:0090567	reproductive shoot system development	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00900	Terpenoid backbone biosynthesis	Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.