Basic Information
Gene ID
AmTr_scaff00099.109.v1.0.g
Position
AmTr_scaff00099:1690579-1706753 (-)
16174bp
Gene Type
gene
Gene Description (Protein Product)
Survival of motor neuron-related-splicing factor
Organism
Also AS AT2G02570AMTR_s00099p00125580

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00136.6.v1.0.g DEAD-box ATP-dependent RNA helicase
AmTr_scaff00155.48.v1.0.g DNA-damage-repair toleration protein DRT111
AmTr_scaff00176.13.v1.0.g splicing factor 3A subunit

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.