Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00100.52.v1.0.g
View in Genome Browser
Position
AmTr_scaff00100:2065437-2068885 (+)
3448bp
Gene Type
gene
Gene Description (Protein Product)
WD-40 repeat-containing protein
Organism
Amborella trichopoda
Also AS AT5G58230AMTR_s00100p00142990

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00115.5.v1.0.g polycomb group protein
AmTr_scaff00111.109.v1.0.g Polycomb group protein EMBRYONIC FLOWER
AmTr_scaff00101.99.v1.0.g Protein ALWAYS EARLY

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000070 mitotic sister chromatid segregation BP
GO:0000118 histone deacetylase complex CC
GO:0000122 negative regulation of transcription by RNA polymerase II BP
GO:0000151 ubiquitin ligase complex CC
GO:0000228 nuclear chromosome CC
GO:0000278 mitotic cell cycle BP
GO:0000280 nuclear division BP
GO:0000281 mitotic cytokinesis BP
GO:0000775 chromosome, centromeric region CC
GO:0000776 kinetochore CC
GO:0000777 kinetochore CC
GO:0000778 kinetochore CC
GO:0000779 condensed chromosome, centromeric region CC
GO:0000780 condensed chromosome, centromeric region CC
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0000793 condensed chromosome CC
GO:0000794 condensed nuclear chromosome CC
GO:0000819 sister chromatid segregation BP
GO:0000910 cytokinesis BP
GO:0000976 transcription cis-regulatory region binding MF
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding MF
GO:0000987 cis-regulatory region sequence-specific DNA binding MF
GO:0001012 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0001558 regulation of cell growth BP
GO:0001708 cell fate specification BP
GO:0002064 epithelial cell development BP
GO:0002065 columnar/cuboidal epithelial cell differentiation BP
GO:0002066 columnar/cuboidal epithelial cell development BP
GO:0002244 hematopoietic progenitor cell differentiation BP
GO:0002376 immune system process BP
GO:0002520 immune system development BP
GO:0003002 regionalization BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003723 RNA binding MF
GO:0003824 catalytic activity MF
GO:0004407 histone deacetylase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005667 transcription regulator complex CC
GO:0005694 chromosome CC
GO:0005700 polytene chromosome CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006277 DNA amplification BP
GO:0006281 DNA repair BP
GO:0006323 chromosome organization BP
GO:0006325 chromatin organization BP
GO:0006333 chromatin organization BP
GO:0006334 nucleosome assembly BP
GO:0006335 DNA replication-dependent chromatin assembly BP
GO:0006336 chromatin organization BP
GO:0006338 chromatin remodeling BP
GO:0006342 heterochromatin formation BP
GO:0006351 DNA-templated transcription BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006464 protein modification process BP
GO:0006473 protein acetylation BP
GO:0006475 internal protein amino acid acetylation BP
GO:0006476 protein deacetylation BP
GO:0006479 protein methylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006996 organelle organization BP
GO:0007049 cell cycle BP
GO:0007059 chromosome segregation BP
GO:0007076 mitotic chromosome condensation BP
GO:0007275 multicellular organism development BP
GO:0007276 gamete generation BP
GO:0007281 germ cell development BP
GO:0007292 female gamete generation BP
GO:0007304 chorion-containing eggshell formation BP
GO:0007306 egg chorion assembly BP
GO:0007307 eggshell chorion gene amplification BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0007379 segment specification BP
GO:0007389 pattern specification process BP
GO:0007548 sex differentiation BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008213 protein alkylation BP
GO:0008283 cell population proliferation BP
GO:0008284 positive regulation of cell population proliferation BP
GO:0008285 negative regulation of cell population proliferation BP
GO:0008406 gonad development BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009266 response to temperature stimulus BP
GO:0009408 response to heat BP
GO:0009611 response to wounding BP
GO:0009628 response to abiotic stimulus BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009790 embryo development BP
GO:0009792 embryo development ending in birth or egg hatching BP
GO:0009887 animal organ morphogenesis BP
GO:0009888 tissue development BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0010286 heat acclimation BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010564 regulation of cell cycle process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0010927 cellular component assembly involved in morphogenesis BP
GO:0010948 negative regulation of cell cycle process BP
GO:0014070 response to organic cyclic compound BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016458 obsolete gene silencing BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016571 histone methylation BP
GO:0016573 histone acetylation BP
GO:0016575 histone deacetylation BP
GO:0016580 Sin3 complex CC
GO:0016581 NuRD complex CC
GO:0016584 obsolete nucleosome positioning BP
GO:0016589 NURF complex CC
GO:0016787 hydrolase activity MF
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds MF
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides MF
GO:0017053 transcription repressor complex CC
GO:0018130 heterocycle biosynthetic process BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0018393 internal peptidyl-lysine acetylation BP
GO:0018394 peptidyl-lysine acetylation BP
GO:0019213 deacetylase activity MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0019953 sexual reproduction BP
GO:0022402 cell cycle process BP
GO:0022412 cellular process involved in reproduction in multicellular organism BP
GO:0022414 reproductive process BP
GO:0022607 cellular component assembly BP
GO:0030097 hemopoiesis BP
GO:0030154 cell differentiation BP
GO:0030261 chromosome condensation BP
GO:0030308 negative regulation of cell growth BP
GO:0030703 eggshell formation BP
GO:0030707 follicle cell of egg chamber development BP
GO:0030855 epithelial cell differentiation BP
GO:0031010 ISWI-type complex CC
GO:0031055 chromatin remodeling at centromere BP
GO:0031099 regeneration BP
GO:0031101 fin regeneration BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031461 cullin-RING ubiquitin ligase complex CC
GO:0031497 chromatin organization BP
GO:0031519 PcG protein complex CC
GO:0031523 Myb complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032221 Rpd3S/Clr6-CII complex CC
GO:0032259 methylation BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0032774 RNA biosynthetic process BP
GO:0032989 cellular component morphogenesis BP
GO:0032991 protein-containing complex CC
GO:0033186 CAF-1 complex CC
GO:0033554 cellular response to stress BP
GO:0033558 protein lysine deacetylase activity MF
GO:0033698 Rpd3L complex CC
GO:0033993 response to lipid BP
GO:0034080 CENP-A containing chromatin assembly BP
GO:0034508 centromere complex assembly BP
GO:0034605 cellular response to heat BP
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0034708 methyltransferase complex CC
GO:0034723 DNA replication-dependent chromatin assembly BP
GO:0034724 chromatin organization BP
GO:0034728 nucleosome organization BP
GO:0035035 histone acetyltransferase binding MF
GO:0035097 histone methyltransferase complex CC
GO:0035098 ESC/E(Z) complex CC
GO:0035239 tube morphogenesis BP
GO:0035282 segmentation BP
GO:0035295 tube development BP
GO:0035601 protein deacylation BP
GO:0036211 protein modification process BP
GO:0040007 growth BP
GO:0040008 regulation of growth BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0040035 obsolete hermaphrodite genitalia development BP
GO:0042060 wound healing BP
GO:0042127 regulation of cell population proliferation BP
GO:0042221 response to chemical BP
GO:0042246 tissue regeneration BP
GO:0042393 histone binding MF
GO:0042766 obsolete nucleosome mobilization BP
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0042826 histone deacetylase binding MF
GO:0043044 chromatin remodeling BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0043486 obsolete histone exchange BP
GO:0043543 protein acylation BP
GO:0043565 sequence-specific DNA binding MF
GO:0043687 post-translational protein modification BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044212 transcription cis-regulatory region binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0045137 development of primary sexual characteristics BP
GO:0045138 nematode male tail tip morphogenesis BP
GO:0045165 cell fate commitment BP
GO:0045786 negative regulation of cell cycle BP
GO:0045814 negative regulation of gene expression, epigenetic BP
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045926 negative regulation of growth BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046661 male sex differentiation BP
GO:0046689 response to mercury ion BP
GO:0046983 protein dimerization activity MF
GO:0048285 organelle fission BP
GO:0048468 cell development BP
GO:0048477 oogenesis BP
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048534 hematopoietic or lymphoid organ development BP
GO:0048545 response to steroid hormone BP
GO:0048546 digestive tract morphogenesis BP
GO:0048557 embryonic digestive tract morphogenesis BP
GO:0048562 embryonic organ morphogenesis BP
GO:0048565 digestive tract development BP
GO:0048566 embryonic digestive tract development BP
GO:0048568 embryonic organ development BP
GO:0048589 developmental growth BP
GO:0048598 embryonic morphogenesis BP
GO:0048608 reproductive structure development BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048731 system development BP
GO:0048806 genitalia development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051128 regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0051301 cell division BP
GO:0051382 kinetochore assembly BP
GO:0051383 kinetochore organization BP
GO:0051704 obsolete multi-organism process BP
GO:0051716 cellular response to stimulus BP
GO:0051726 regulation of cell cycle BP
GO:0055123 digestive system development BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060429 epithelium development BP
GO:0061458 reproductive system development BP
GO:0061640 cytoskeleton-dependent cytokinesis BP
GO:0061641 CENP-A containing chromatin assembly BP
GO:0065003 protein-containing complex assembly BP
GO:0065004 protein-DNA complex assembly BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070176 DRM complex CC
GO:0070210 Rpd3L-Expanded complex CC
GO:0070316 regulation of G0 to G1 transition BP
GO:0070317 negative regulation of G0 to G1 transition BP
GO:0070370 cellular heat acclimation BP
GO:0070603 SWI/SNF superfamily-type complex CC
GO:0070822 Sin3-type complex CC
GO:0070925 organelle assembly BP
GO:0071103 DNA conformation change BP
GO:0071704 organic substance metabolic process BP
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071897 DNA biosynthetic process BP
GO:0080008 Cul4-RING E3 ubiquitin ligase complex CC
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0090545 CHD-type complex CC
GO:0090568 transcription repressor complex CC
GO:0090571 RNA polymerase II transcription repressor complex CC
GO:0090598 male anatomical structure morphogenesis BP
GO:0097159 organic cyclic compound binding MF
GO:0097659 nucleic acid-templated transcription BP
GO:0098654 CENP-A recruiting complex CC
GO:0098687 chromosomal region CC
GO:0098732 macromolecule deacylation BP
GO:0098813 nuclear chromosome segregation BP
GO:0140014 mitotic nuclear division BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1902494 catalytic complex CC
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903047 mitotic cell cycle process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1904949 ATPase complex CC
GO:1990234 transferase complex CC
GO:1990483 Clr6 histone deacetylase complex I'' CC
GO:1990837 sequence-specific double-stranded DNA binding MF
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP