Basic Information
Gene ID
AmTr_scaff00119.95.v1.0.g
Position
AmTr_scaff00119:1607950-1622255 (+)
14305bp
Gene Type
gene
Gene Description (Protein Product)
Methyl-CpG-binding domain protein
Organism
Also AS AT3G07930AMTR_s00119p00121460

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description


Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0005488 binding MF
GO:0008150 biological_process BP
GO:0009314 response to radiation BP
GO:0009628 response to abiotic stimulus BP
GO:0050896 response to stimulus BP
GO:0097159 organic cyclic compound binding MF
GO:1901363 heterocyclic compound binding MF
KEGG Term Name Description
map03410 Base excision repair Base excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair initiated by lesion-specific DNA glycosylases and completed by either of the two sub-pathways: short-patch BER where only one nucleotide is replaced and long-patch BER where 2-13 nucleotides are replaced. Each sub-pathway of BER relies on the formation of protein complexes that assemble at the site of the DNA lesion and facilitate repair in a coordinated fashion. This process of complex formation appears to provide an increase in specificity and efficiency to the BER pathway, thereby facilitating the maintenance of genome integrity by preventing the accumulation of highly toxic repair intermediates.