Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00127.19.v1.0.g
View in Genome Browser
Position
AmTr_scaff00127:1127997-1128308 (-)
311bp
Gene Type
gene
Gene Description (Protein Product)
structural constituent of ribosome
Organism
Amborella trichopoda
Also AS ATMG00210AMTR_s00127p00094990

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00156.37.v1.0.g Belongs to the universal ribosomal protein uL15 family
AmTr_scaff00160.6.v1.0.g Belongs to the universal ribosomal protein uS5 family
AmTr_scaff00168.6.v1.0.g Belongs to the universal ribosomal protein uS8 family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000313 organellar ribosome CC
GO:0000314 organellar small ribosomal subunit CC
GO:0003674 molecular_function MF
GO:0003735 structural constituent of ribosome MF
GO:0005198 structural molecule activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005740 mitochondrial envelope CC
GO:0005743 mitochondrial inner membrane CC
GO:0005759 mitochondrial matrix CC
GO:0005761 mitochondrial ribosome CC
GO:0005763 mitochondrial small ribosomal subunit CC
GO:0005840 ribosome CC
GO:0006091 generation of precursor metabolites and energy BP
GO:0006412 translation BP
GO:0006414 translational elongation BP
GO:0006415 translational termination BP
GO:0006518 peptide metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009060 aerobic respiration BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0015935 small ribosomal subunit CC
GO:0015980 energy derivation by oxidation of organic compounds BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0019538 protein metabolic process BP
GO:0019866 organelle inner membrane CC
GO:0022411 cellular component disassembly BP
GO:0022900 electron transport chain BP
GO:0022904 respiratory electron transport chain BP
GO:0031090 organelle membrane CC
GO:0031966 mitochondrial membrane CC
GO:0031967 organelle envelope CC
GO:0031974 membrane-enclosed lumen CC
GO:0031975 envelope CC
GO:0032543 mitochondrial translation BP
GO:0032984 protein-containing complex disassembly BP
GO:0032991 protein-containing complex CC
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0043043 peptide biosynthetic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0043624 protein-containing complex disassembly BP
GO:0043933 protein-containing complex organization BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044391 ribosomal subunit CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045273 respiratory chain complex II CC
GO:0045333 cellular respiration BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0070013 intracellular organelle lumen CC
GO:0070125 mitochondrial translational elongation BP
GO:0070126 mitochondrial translational termination BP
GO:0070469 respirasome CC
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0098796 membrane protein complex CC
GO:0098798 mitochondrial protein-containing complex CC
GO:0098803 respiratory chain complex CC
GO:0140053 mitochondrial gene expression BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1990904 ribonucleoprotein complex CC
KEGG Term Name Description
map03010 Ribosome -
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00190 Oxidative phosphorylation -
map00020 Citrate cycle (TCA cycle) The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].