Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00168.16.v1.0.g
View in Genome Browser
Position
AmTr_scaff00168:483859-484020 (-)
161bp
Gene Type
gene
Gene Description (Protein Product)
positive regulation of B cell differentiation
Organism
Amborella trichopoda
Also AS AT5G18580AMTR_s00168p00051310

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00169.32.v1.0.g phosphatase 2A 55 kDa regulatory subunit B
AmTr_scaff00171.40.v1.0.g serine threonine-protein phosphatase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000226 microtubule cytoskeleton organization BP
GO:0000278 mitotic cell cycle BP
GO:0000280 nuclear division BP
GO:0001776 leukocyte homeostasis BP
GO:0001782 B cell homeostasis BP
GO:0001932 regulation of protein phosphorylation BP
GO:0001934 positive regulation of protein phosphorylation BP
GO:0002260 lymphocyte homeostasis BP
GO:0002376 immune system process BP
GO:0002520 immune system development BP
GO:0002682 regulation of immune system process BP
GO:0002684 positive regulation of immune system process BP
GO:0002694 regulation of leukocyte activation BP
GO:0002696 positive regulation of leukocyte activation BP
GO:0002759 regulation of antimicrobial humoral response BP
GO:0002831 regulation of response to biotic stimulus BP
GO:0002920 regulation of humoral immune response BP
GO:0003254 regulation of membrane depolarization BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005794 Golgi apparatus CC
GO:0005813 centrosome CC
GO:0005815 microtubule organizing center CC
GO:0005819 spindle CC
GO:0005829 cytosol CC
GO:0005856 cytoskeleton CC
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007017 microtubule-based process BP
GO:0007049 cell cycle BP
GO:0007051 spindle organization BP
GO:0007052 mitotic spindle organization BP
GO:0007275 multicellular organism development BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0009790 embryo development BP
GO:0009792 embryo development ending in birth or egg hatching BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010562 positive regulation of phosphorus metabolic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0012505 endomembrane system CC
GO:0015630 microtubule cytoskeleton CC
GO:0016043 cellular component organization BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019899 enzyme binding MF
GO:0019902 phosphatase binding MF
GO:0019903 protein phosphatase binding MF
GO:0022402 cell cycle process BP
GO:0022607 cellular component assembly BP
GO:0030865 cortical cytoskeleton organization BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031399 regulation of protein modification process BP
GO:0031401 positive regulation of protein modification process BP
GO:0032101 regulation of response to external stimulus BP
GO:0032147 activation of protein kinase activity BP
GO:0032268 regulation of protein metabolic process BP
GO:0032270 positive regulation of protein metabolic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0033674 positive regulation of kinase activity BP
GO:0034613 protein localization BP
GO:0042325 regulation of phosphorylation BP
GO:0042327 positive regulation of phosphorylation BP
GO:0042391 regulation of membrane potential BP
GO:0042592 homeostatic process BP
GO:0043029 T cell homeostasis BP
GO:0043085 positive regulation of catalytic activity BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043549 regulation of kinase activity BP
GO:0043900 obsolete regulation of multi-organism process BP
GO:0044085 cellular component biogenesis BP
GO:0044093 positive regulation of molecular function BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045577 regulation of B cell differentiation BP
GO:0045579 positive regulation of B cell differentiation BP
GO:0045595 regulation of cell differentiation BP
GO:0045597 positive regulation of cell differentiation BP
GO:0045619 regulation of lymphocyte differentiation BP
GO:0045621 positive regulation of lymphocyte differentiation BP
GO:0045859 regulation of protein kinase activity BP
GO:0045860 positive regulation of protein kinase activity BP
GO:0045937 positive regulation of phosphate metabolic process BP
GO:0048285 organelle fission BP
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048534 hematopoietic or lymphoid organ development BP
GO:0048536 spleen development BP
GO:0048583 regulation of response to stimulus BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048872 homeostasis of number of cells BP
GO:0048878 chemical homeostasis BP
GO:0050776 regulation of immune response BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050801 monoatomic ion homeostasis BP
GO:0050864 regulation of B cell activation BP
GO:0050865 regulation of cell activation BP
GO:0050867 positive regulation of cell activation BP
GO:0050871 positive regulation of B cell activation BP
GO:0051094 positive regulation of developmental process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051179 localization BP
GO:0051225 spindle assembly BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051240 positive regulation of multicellular organismal process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051247 positive regulation of protein metabolic process BP
GO:0051249 regulation of lymphocyte activation BP
GO:0051251 positive regulation of lymphocyte activation BP
GO:0051338 regulation of transferase activity BP
GO:0051347 positive regulation of transferase activity BP
GO:0051641 cellular localization BP
GO:0051721 protein phosphatase 2A binding MF
GO:0051881 regulation of mitochondrial membrane potential BP
GO:0051900 regulation of mitochondrial depolarization BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0065009 regulation of molecular function BP
GO:0070727 cellular macromolecule localization BP
GO:0070925 organelle assembly BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090307 mitotic spindle assembly BP
GO:0140014 mitotic nuclear division BP
GO:1902105 regulation of leukocyte differentiation BP
GO:1902107 positive regulation of leukocyte differentiation BP
GO:1902850 microtubule cytoskeleton organization involved in mitosis BP
GO:1903047 mitotic cell cycle process BP
GO:1903706 regulation of hemopoiesis BP
GO:1903708 positive regulation of hemopoiesis BP
GO:2000026 regulation of multicellular organismal development BP
KEGG Term Name Description
map03015 mRNA surveillance pathway The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.