Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff01214.1.v1.0.g
View in Genome Browser
Position
AmTr_scaff01214:96-1163 (-)
1067bp
Gene Type
gene
Gene Description (Protein Product)
DNA repair
Organism
Amborella trichopoda
Also AS AT5G41150AMTR_s01214p00000780

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff02377.1.v1.0.g Helicase and polymerase-containing protein
AmTr_scaff03028.1.v1.0.g ubiquitinyl hydrolase activity
AmTr_scaff01499.1.v1.0.g rna polymerase

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000014 single-stranded DNA endodeoxyribonuclease activity MF
GO:0000109 nucleotide-excision repair complex CC
GO:0000110 nucleotide-excision repair factor 1 complex CC
GO:0000280 nuclear division BP
GO:0000710 meiotic mismatch repair BP
GO:0000712 resolution of meiotic recombination intermediates BP
GO:0000724 double-strand break repair via homologous recombination BP
GO:0000725 recombinational repair BP
GO:0000726 obsolete non-recombinational repair BP
GO:0000735 removal of nonhomologous ends BP
GO:0000736 double-strand break repair via single-strand annealing, removal of nonhomologous ends BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003684 damaged DNA binding MF
GO:0003697 single-stranded DNA binding MF
GO:0003824 catalytic activity MF
GO:0004518 nuclease activity MF
GO:0004519 endonuclease activity MF
GO:0004520 DNA endonuclease activity MF
GO:0004536 deoxyribonuclease activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006277 DNA amplification BP
GO:0006281 DNA repair BP
GO:0006289 nucleotide-excision repair BP
GO:0006296 obsolete nucleotide-excision repair, DNA incision, 5'-to lesion BP
GO:0006298 mismatch repair BP
GO:0006302 double-strand break repair BP
GO:0006310 DNA recombination BP
GO:0006312 mitotic recombination BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006996 organelle organization BP
GO:0007049 cell cycle BP
GO:0007059 chromosome segregation BP
GO:0007127 meiosis I BP
GO:0007131 reciprocal meiotic recombination BP
GO:0007530 sex determination BP
GO:0007531 mating type determination BP
GO:0007533 mating type switching BP
GO:0007534 gene conversion at mating-type locus BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016787 hydrolase activity MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0022402 cell cycle process BP
GO:0022413 reproductive process in single-celled organism BP
GO:0022414 reproductive process BP
GO:0030154 cell differentiation BP
GO:0032502 developmental process BP
GO:0032505 reproduction of a single-celled organism BP
GO:0032991 protein-containing complex CC
GO:0033554 cellular response to stress BP
GO:0033683 obsolete nucleotide-excision repair, DNA incision BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0035822 gene conversion BP
GO:0035825 homologous recombination BP
GO:0036297 interstrand cross-link repair BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045002 double-strand break repair via single-strand annealing BP
GO:0045132 meiotic chromosome segregation BP
GO:0045165 cell fate commitment BP
GO:0046483 heterocycle metabolic process BP
GO:0048285 organelle fission BP
GO:0048869 cellular developmental process BP
GO:0050896 response to stimulus BP
GO:0051304 chromosome separation BP
GO:0051307 meiotic chromosome separation BP
GO:0051321 meiotic cell cycle BP
GO:0051716 cellular response to stimulus BP
GO:0061982 meiosis I cell cycle process BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071897 DNA biosynthetic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0090305 nucleic acid phosphodiester bond hydrolysis BP
GO:0097159 organic cyclic compound binding MF
GO:0098813 nuclear chromosome segregation BP
GO:0140013 meiotic nuclear division BP
GO:0140097 catalytic activity, acting on DNA MF
GO:1901255 nucleotide-excision repair involved in interstrand cross-link repair BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901576 organic substance biosynthetic process BP
GO:1903046 meiotic cell cycle process BP
GO:1990391 DNA repair complex CC
GO:1990599 3' overhang single-stranded DNA endodeoxyribonuclease activity MF
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.