Basic Information
Gene ID
Bpev01.c1206.g0007
Position
Contig1206:34140-43321 (+)
9181bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor 3B subunit
Organism
Also AS AT3G55200

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Bpev01.c1608.g0001 splicing factor 3A subunit
Bpev01.c1513.g0004 NHP2-like protein 1
Bpev01.c1557.g0010 WD-40 repeat-containing protein
Regulatory gene
Bpev01.c0001.g0063 Protein LHY-like isoform X1
Bpev01.c0015.g0036 Floral homeotic protein APETALA
Bpev01.c0015.g0045 WRKY Transcription Factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.