Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Bpev01.c4934.g0001
View in Genome Browser
Position
Contig4934:27-1950 (-)
1923bp
Gene Type
gene
Gene Description (Protein Product)
Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate
Organism
Betula pendula
Also AS AT3G06860

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Bpev01.c5244.g0001 CoA transferase having broad substrate specificity for short-chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons
Bpev01.c5278.g0001 Belongs to the mannitol dehydrogenase family
Bpev01.c4997.g0001 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Regulatory gene
Bpev01.c0027.g0023 transcription factor
Bpev01.c0027.g0032 Myb/SANT-like DNA-binding domain
Bpev01.c0042.g0029 Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity MF
GO:0004165 delta(3)-delta(2)-enoyl-CoA isomerase activity MF
GO:0004300 enoyl-CoA hydratase activity MF
GO:0006082 organic acid metabolic process BP
GO:0006629 lipid metabolic process BP
GO:0006631 fatty acid metabolic process BP
GO:0006635 fatty acid beta-oxidation BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008692 3-hydroxybutyryl-CoA epimerase activity MF
GO:0009056 catabolic process BP
GO:0009062 fatty acid catabolic process BP
GO:0009987 cellular process BP
GO:0016042 lipid catabolic process BP
GO:0016054 organic acid catabolic process BP
GO:0016491 oxidoreductase activity MF
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor MF
GO:0016829 lyase activity MF
GO:0016835 carbon-oxygen lyase activity MF
GO:0016836 hydro-lyase activity MF
GO:0016853 isomerase activity MF
GO:0016854 racemase and epimerase activity MF
GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives MF
GO:0016860 intramolecular oxidoreductase activity MF
GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds MF
GO:0019395 fatty acid oxidation BP
GO:0019752 carboxylic acid metabolic process BP
GO:0030258 lipid modification BP
GO:0032787 monocarboxylic acid metabolic process BP
GO:0034440 lipid oxidation BP
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044242 cellular lipid catabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044255 cellular lipid metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0046395 carboxylic acid catabolic process BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0071704 organic substance metabolic process BP
GO:0072329 monocarboxylic acid catabolic process BP
GO:1901575 organic substance catabolic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map01100 Metabolic pathways -
map00650 Butanoate metabolism -
map00650 Butanoate metabolism -
map00640 Propanoate metabolism -
map00640 Propanoate metabolism -
map00410 beta-Alanine metabolism -
map00410 beta-Alanine metabolism -
map00380 Tryptophan metabolism -
map00380 Tryptophan metabolism -
map00310 Lysine degradation -
map00310 Lysine degradation -
map00280 Valine, leucine and isoleucine degradation -
map00280 Valine, leucine and isoleucine degradation -
map00071 Fatty acid metabolism -
map00071 Fatty acid metabolism -