PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c4982.g0001 View in Genome Browser
Position	Contig4982:371-838 (-) 467bp
Gene Type	gene
Gene Description (Protein Product)	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
Organism	Betula pendula
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upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c4982.g0002 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1

Bpev01.c5455.g0002 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate

Bpev01.c4982.g0003 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons

Regulatory gene

Bpev01.c0015.g0167 Ethylene-responsive transcription factor-like protein

Bpev01.c0015.g0225 ZINC FINGER protein

Bpev01.c0027.g0023 transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0005887	plasma membrane	CC
GO:0006629	lipid metabolic process	BP
GO:0006644	phospholipid metabolic process	BP
GO:0006650	glycerophospholipid metabolic process	BP
GO:0006655	phosphatidylglycerol biosynthetic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008610	lipid biosynthetic process	BP
GO:0008654	phospholipid biosynthetic process	BP
GO:0008962	phosphatidylglycerophosphatase activity	MF
GO:0009058	biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010035	response to inorganic substance	BP
GO:0010038	response to metal ion	BP
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0016311	dephosphorylation	BP
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0016791	phosphatase activity	MF
GO:0019637	organophosphate metabolic process	BP
GO:0030258	lipid modification	BP
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0031226	obsolete intrinsic component of plasma membrane	CC
GO:0032026	response to magnesium ion	BP
GO:0042221	response to chemical	BP
GO:0042577	lipid phosphatase activity	MF
GO:0042578	phosphoric ester hydrolase activity	MF
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044425	obsolete membrane part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0045017	glycerolipid biosynthetic process	BP
GO:0046471	phosphatidylglycerol metabolic process	BP
GO:0046474	glycerophospholipid biosynthetic process	BP
GO:0046486	glycerolipid metabolic process	BP
GO:0046839	phospholipid dephosphorylation	BP
GO:0050896	response to stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0071944	cell periphery	CC
GO:0090407	organophosphate biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00564	Glycerophospholipid metabolism	-