Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Bpev01.c5007.g0002
View in Genome Browser
Position
Contig5007:1647-2858 (-)
1211bp
Gene Type
gene
Gene Description (Protein Product)
GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Organism
Betula pendula
Also AS AT5G57960

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Bpev01.c5465.g0003 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
Regulatory gene
Bpev01.c0000.g0029 transcription factor
Bpev01.c0000.g0030 transcription factor
Bpev01.c0000.g0174 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000166 nucleotide binding MF
GO:0001882 nucleoside binding MF
GO:0001883 purine nucleoside binding MF
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003824 catalytic activity MF
GO:0003924 GTPase activity MF
GO:0005488 binding MF
GO:0005524 ATP binding MF
GO:0005525 GTP binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006412 translation BP
GO:0006414 translational elongation BP
GO:0006417 regulation of translation BP
GO:0006464 protein modification process BP
GO:0006468 protein phosphorylation BP
GO:0006518 peptide metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006996 organelle organization BP
GO:0008144 obsolete drug binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009266 response to temperature stimulus BP
GO:0009408 response to heat BP
GO:0009628 response to abiotic stimulus BP
GO:0009889 regulation of biosynthetic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010608 post-transcriptional regulation of gene expression BP
GO:0016043 cellular component organization BP
GO:0016310 phosphorylation BP
GO:0016462 pyrophosphatase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017076 purine nucleotide binding MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0018105 peptidyl-serine phosphorylation BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018209 peptidyl-serine modification BP
GO:0019001 guanyl nucleotide binding MF
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019843 rRNA binding MF
GO:0022411 cellular component disassembly BP
GO:0030554 adenyl nucleotide binding MF
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0032268 regulation of protein metabolic process BP
GO:0032549 ribonucleoside binding MF
GO:0032550 purine ribonucleoside binding MF
GO:0032553 ribonucleotide binding MF
GO:0032555 purine ribonucleotide binding MF
GO:0032559 adenyl ribonucleotide binding MF
GO:0032561 guanyl ribonucleotide binding MF
GO:0032790 ribosome disassembly BP
GO:0032984 protein-containing complex disassembly BP
GO:0032988 ribonucleoprotein complex disassembly BP
GO:0034248 regulation of amide metabolic process BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0035639 purine ribonucleoside triphosphate binding MF
GO:0036094 small molecule binding MF
GO:0036211 protein modification process BP
GO:0036289 peptidyl-serine autophosphorylation BP
GO:0043021 ribonucleoprotein complex binding MF
GO:0043022 ribosome binding MF
GO:0043023 ribosomal large subunit binding MF
GO:0043043 peptide biosynthetic process BP
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0043933 protein-containing complex organization BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044877 protein-containing complex binding MF
GO:0046777 protein autophosphorylation BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051246 regulation of protein metabolic process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0071826 ribonucleoprotein complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072344 rescue of stalled ribosome BP
GO:0080090 regulation of primary metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:1901265 nucleoside phosphate binding MF
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1903008 organelle disassembly BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP