PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c5170.g0001 View in Genome Browser
Position	Contig5170:21-749 (-) 728bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the glycerate kinase type-1 family
Organism	Betula pendula
Also AS

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5430.g0001 Catalyzes the NAD-dependent oxidation of glycerol to dihydroxyacetone (glycerone). Allows microorganisms to utilize glycerol as a source of carbon under anaerobic conditions. In E.coli, an important role of GldA is also likely to regulate the intracellular level of dihydroxyacetone by catalyzing the reverse reaction, i.e. the conversion of dihydroxyacetone into glycerol. Possesses a broad substrate specificity, since it is also able to oxidize 1,2-propanediol and to reduce glycolaldehyde, methylglyoxal and hydroxyacetone into ethylene glycol, lactaldehyde and 1,2-propanediol, respectively

Bpev01.c5625.g0001 melibiose metabolic process

Bpev01.c5268.g0001 phosphopentomutase activity

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005975	carbohydrate metabolic process	BP
GO:0006082	organic acid metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009987	cellular process	BP
GO:0016052	carbohydrate catabolic process	BP
GO:0016054	organic acid catabolic process	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016491	oxidoreductase activity	MF
GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	MF
GO:0016662	oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor	MF
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0019392	glucarate metabolic process	BP
GO:0019394	glucarate catabolic process	BP
GO:0019577	aldaric acid metabolic process	BP
GO:0019579	aldaric acid catabolic process	BP
GO:0019580	galactarate metabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0042737	xenobiotic catabolic process	BP
GO:0042836	D-glucarate metabolic process	BP
GO:0042838	D-glucarate catabolic process	BP
GO:0043436	oxoacid metabolic process	BP
GO:0043648	dicarboxylic acid metabolic process	BP
GO:0043649	dicarboxylic acid catabolic process	BP
GO:0043798	glycerate 2-kinase activity	MF
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044282	small molecule catabolic process	BP
GO:0046392	galactarate catabolic process	BP
GO:0046395	carboxylic acid catabolic process	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:1901575	organic substance catabolic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00630	Glyoxylate and dicarboxylate metabolism	-
map00561	Glycerolipid metabolism	-
map00260	Glycine, serine and threonine metabolism	Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].