Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Bpev01.c5245.g0001
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Position
Contig5245:121-1564 (-)
1443bp
Gene Type
gene
Gene Description (Protein Product)
Methyl-accepting chemotaxis protein
Organism
Betula pendula
Also AS

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Bpev01.c5322.g0001 Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB
Bpev01.c5460.g0001 Member of the two-component regulatory system AtoS AtoC. In the presence of acetoacetate, AtoS AtoC stimulates the expression of the atoDAEB operon, leading to short chain fatty acid catabolism and activation of the poly-(R)-3-hydroxybutyrate (cPHB) biosynthetic pathway. Also induces the operon in response to spermidine. Involved in the regulation of motility and chemotaxis, via transcriptional induction of the flagellar regulon. AtoC acts by binding directly to the promoter region of the target genes. In addition to its role as a transcriptional regulator, functions as a post- translational regulator that inhibits polyamine biosynthesis via regulation of ornithine decarboxylase (ODC)
Bpev01.c5380.g0001 Extracellular solute-binding protein, family 5

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0001101 response to acid chemical BP
GO:0001932 regulation of protein phosphorylation BP
GO:0003674 molecular_function MF
GO:0004888 transmembrane signaling receptor activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0005887 plasma membrane CC
GO:0006928 obsolete movement of cell or subcellular component BP
GO:0006935 chemotaxis BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007172 signal complex assembly BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0009593 detection of chemical stimulus BP
GO:0009605 response to external stimulus BP
GO:0009719 response to endogenous stimulus BP
GO:0009966 regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010243 response to organonitrogen compound BP
GO:0010646 regulation of cell communication BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016043 cellular component organization BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019899 enzyme binding MF
GO:0019900 kinase binding MF
GO:0019901 protein kinase binding MF
GO:0022607 cellular component assembly BP
GO:0023051 regulation of signaling BP
GO:0023052 signaling BP
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031226 obsolete intrinsic component of plasma membrane CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031399 regulation of protein modification process BP
GO:0032101 regulation of response to external stimulus BP
GO:0032110 regulation of protein histidine kinase activity BP
GO:0032268 regulation of protein metabolic process BP
GO:0032879 regulation of localization BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0034613 protein localization BP
GO:0034622 protein-containing complex assembly BP
GO:0038023 signaling receptor activity MF
GO:0040011 locomotion BP
GO:0040012 regulation of locomotion BP
GO:0042221 response to chemical BP
GO:0042325 regulation of phosphorylation BP
GO:0042330 taxis BP
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0043113 receptor clustering BP
GO:0043200 response to amino acid BP
GO:0043424 protein histidine kinase binding MF
GO:0043549 regulation of kinase activity BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044425 obsolete membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0045859 regulation of protein kinase activity BP
GO:0046983 protein dimerization activity MF
GO:0048583 regulation of response to stimulus BP
GO:0048870 cell motility BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0050920 regulation of chemotaxis BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051179 localization BP
GO:0051246 regulation of protein metabolic process BP
GO:0051259 protein complex oligomerization BP
GO:0051260 protein homooligomerization BP
GO:0051270 obsolete regulation of cellular component movement BP
GO:0051338 regulation of transferase activity BP
GO:0051606 detection of stimulus BP
GO:0051641 cellular localization BP
GO:0051668 localization within membrane BP
GO:0051674 localization of cell BP
GO:0051716 cellular response to stimulus BP
GO:0060089 molecular transducer activity MF
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070727 cellular macromolecule localization BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071229 cellular response to acid chemical BP
GO:0071230 cellular response to amino acid stimulus BP
GO:0071310 cellular response to organic substance BP
GO:0071417 cellular response to organonitrogen compound BP
GO:0071495 cellular response to endogenous stimulus BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0072657 protein localization to membrane BP
GO:0080090 regulation of primary metabolic process BP
GO:0098561 methyl accepting chemotaxis protein complex CC
GO:1901698 response to nitrogen compound BP
GO:1901699 cellular response to nitrogen compound BP
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP
GO:1902021 regulation of bacterial-type flagellum-dependent cell motility BP
GO:2000145 regulation of cell motility BP