Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Bpev01.c5424.g0002
View in Genome Browser
Position
Contig5424:1589-2200 (+)
611bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the beta-eliminating lyase family
Organism
Betula pendula
Also AS

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Bpev01.c5615.g0002 Part of the anaerobic respiratory chain of trimethylamine-N-oxide reductase TorA. Acts by transferring electrons from the membranous menaquinones to TorA. This transfer probably involves an electron transfer pathway from menaquinones to the N-terminal domain of TorC, then from the N-terminus to the C-terminus, and finally to TorA. TorC apocytochrome negatively autoregulates the torCAD operon probably by inhibiting the TorS kinase activity
Bpev01.c5633.g0001 Hydrolyzes c-di-GMP (cyclic bis(3'-5') dimeric GMP) to 5'-pGpG, known as PDE-A activity. PDE-B activity, that is hydrolysis of 5'-pGpG to GMP, proceeds only very slowly

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0006082 organic acid metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006568 tryptophan metabolic process BP
GO:0006569 tryptophan catabolic process BP
GO:0006576 biogenic amine metabolic process BP
GO:0006586 indolalkylamine metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008144 obsolete drug binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009034 tryptophanase activity MF
GO:0009056 catabolic process BP
GO:0009063 amino acid catabolic process BP
GO:0009072 aromatic amino acid metabolic process BP
GO:0009074 aromatic amino acid family catabolic process BP
GO:0009308 amine metabolic process BP
GO:0009310 amine catabolic process BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016054 organic acid catabolic process BP
GO:0016829 lyase activity MF
GO:0016830 carbon-carbon lyase activity MF
GO:0016846 carbon-sulfur lyase activity MF
GO:0019439 aromatic compound catabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0019842 vitamin binding MF
GO:0022607 cellular component assembly BP
GO:0030170 pyridoxal phosphate binding MF
GO:0030955 potassium ion binding MF
GO:0031420 alkali metal ion binding MF
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0036094 small molecule binding MF
GO:0042402 cellular biogenic amine catabolic process BP
GO:0042430 indole-containing compound metabolic process BP
GO:0042436 indole-containing compound catabolic process BP
GO:0042802 identical protein binding MF
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043169 cation binding MF
GO:0043436 oxoacid metabolic process BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044106 amine metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044270 cellular nitrogen compound catabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0044464 obsolete cell part CC
GO:0046218 obsolete indolalkylamine catabolic process BP
GO:0046395 carboxylic acid catabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046700 heterocycle catabolic process BP
GO:0046872 metal ion binding MF
GO:0048037 obsolete cofactor binding MF
GO:0050662 obsolete coenzyme binding MF
GO:0051259 protein complex oligomerization BP
GO:0051260 protein homooligomerization BP
GO:0051262 protein tetramerization BP
GO:0051289 protein homotetramerization BP
GO:0060187 cell pole CC
GO:0065003 protein-containing complex assembly BP
GO:0070279 vitamin B6 binding MF
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080146 L-cysteine desulfhydrase activity MF
GO:0097159 organic cyclic compound binding MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901361 organic cyclic compound catabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901606 alpha-amino acid catabolic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00380 Tryptophan metabolism -