PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c5460.g0002 View in Genome Browser
Position	Contig5460:1629-2282 (-) 653bp
Gene Type	gene
Gene Description (Protein Product)	"Member of the two-component regulatory system AtoS AtoC. In the presence of acetoacetate
Organism	Betula pendula
Also AS	AT1G66340

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5599.g0002 Member of a two-component regulatory system QseB QseC. Activates the flagella regulon by activating transcription of FlhDC. Currently it is not known whether this effect is direct or not

Bpev01.c5615.g0001 Member of the two-component regulatory system TorS TorR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Phosphorylated TorR activates the transcription of the torCAD operon by binding to four decameric boxes located in the torCAD promoter. Box1, 2 and 4 contain the DNA sequence 5'- CTGTTCATAT-3' and box3 contains the DNA sequence 5'-CCGTTCATCC-3'. Phosphorylated as well as unphosphorylated TorR negatively regulates its own expression by binding to box1 and 2

Bpev01.c5462.g0007 Represses ulaG and the ulaABCDEF operon

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000155	phosphorelay sensor kinase activity	MF
GO:0000160	phosphorelay signal transduction system	BP
GO:0000166	nucleotide binding	MF
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004672	protein kinase activity	MF
GO:0004673	protein histidine kinase activity	MF
GO:0005488	binding	MF
GO:0005524	ATP binding	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0006464	protein modification process	BP
GO:0006468	protein phosphorylation	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0008144	obsolete drug binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009987	cellular process	BP
GO:0016020	membrane	CC
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016773	phosphotransferase activity, alcohol group as acceptor	MF
GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	MF
GO:0017076	purine nucleotide binding	MF
GO:0018106	peptidyl-histidine phosphorylation	BP
GO:0018193	peptidyl-amino acid modification	BP
GO:0018202	peptidyl-histidine modification	BP
GO:0019538	protein metabolic process	BP
GO:0023014	signal transduction	BP
GO:0023052	signaling	BP
GO:0030554	adenyl nucleotide binding	MF
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032559	adenyl ribonucleotide binding	MF
GO:0035556	intracellular signal transduction	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0036211	protein modification process	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043412	macromolecule modification	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044464	obsolete cell part	CC
GO:0046777	protein autophosphorylation	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0065007	biological regulation	BP
GO:0071704	organic substance metabolic process	BP
GO:0071944	cell periphery	CC
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP