PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c5581.g0003 View in Genome Browser
Position	Contig5581:1148-2247 (-) 1099bp
Gene Type	gene
Gene Description (Protein Product)	COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Organism	Betula pendula
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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5592.g0003 Activates expression of the rhaSR operon in response to L-rhamnose

Bpev01.c5625.g0003 Biodegradative arginine decarboxylase

Bpev01.c5628.g0001 Responsible for transport of beta-galactosides into the cell, with the concomitant import of a proton (symport system). Can transport lactose, melibiose, lactulose or the analog methyl- 1-thio-beta,D-galactopyranoside (TMG), but not sucrose or fructose. The substrate specificity is directed toward the galactopyranosyl moiety of the substrate

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000166	nucleotide binding	MF
GO:0000302	response to reactive oxygen species	BP
GO:0000303	response to superoxide	BP
GO:0000305	response to oxygen radical	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004324	ferredoxin-NADP+ reductase activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0005996	monosaccharide metabolic process	BP
GO:0006000	fructose metabolic process	BP
GO:0006001	fructose catabolic process	BP
GO:0006790	sulfur compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006979	response to oxidative stress	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009987	cellular process	BP
GO:0010035	response to inorganic substance	BP
GO:0016043	cellular component organization	BP
GO:0016052	carbohydrate catabolic process	BP
GO:0016226	iron-sulfur cluster assembly	BP
GO:0016491	oxidoreductase activity	MF
GO:0016730	oxidoreductase activity, acting on iron-sulfur proteins as donors	MF
GO:0016731	oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor	MF
GO:0019318	hexose metabolic process	BP
GO:0019320	hexose catabolic process	BP
GO:0022607	cellular component assembly	BP
GO:0031163	metallo-sulfur cluster assembly	BP
GO:0036094	small molecule binding	MF
GO:0042221	response to chemical	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044282	small molecule catabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046365	monosaccharide catabolic process	BP
GO:0048037	obsolete cofactor binding	MF
GO:0050660	flavin adenine dinucleotide binding	MF
GO:0050662	obsolete coenzyme binding	MF
GO:0050896	response to stimulus	BP
GO:0051186	obsolete cofactor metabolic process	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071949	FAD binding	MF
GO:0097159	organic cyclic compound binding	MF
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901575	organic substance catabolic process	BP
GO:1901700	response to oxygen-containing compound	BP