PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c5583.g0002 View in Genome Browser
Position	Contig5583:1303-1962 (-) 659bp
Gene Type	gene
Gene Description (Protein Product)	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Organism	Betula pendula
Also AS

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5615.g0002 Part of the anaerobic respiratory chain of trimethylamine-N-oxide reductase TorA. Acts by transferring electrons from the membranous menaquinones to TorA. This transfer probably involves an electron transfer pathway from menaquinones to the N-terminal domain of TorC, then from the N-terminus to the C-terminus, and finally to TorA. TorC apocytochrome negatively autoregulates the torCAD operon probably by inhibiting the TorS kinase activity

Bpev01.c5612.g0005 preribosome binding

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0005887	plasma membrane	CC
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0031226	obsolete intrinsic component of plasma membrane	CC
GO:0032991	protein-containing complex	CC
GO:0042623	ATP hydrolysis activity	MF
GO:0043190	ATP-binding cassette (ABC) transporter complex	CC
GO:0044425	obsolete membrane part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0071944	cell periphery	CC
GO:0098533	ATPase dependent transmembrane transport complex	CC
GO:0098796	membrane protein complex	CC
GO:0098797	plasma membrane protein complex	CC
GO:1902494	catalytic complex	CC
GO:1902495	transmembrane transporter complex	CC
GO:1904949	ATPase complex	CC
GO:1990351	transporter complex	CC

KEGG Term	Name	Description
map02010	ABC transporters	The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).