PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Bpev01.c5612.g0002 View in Genome Browser
Position	Contig5612:1211-1722 (-) 511bp
Gene Type	gene
Gene Description (Protein Product)	"PFAM Peptidase S13
Organism	Betula pendula
Also AS

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000270	peptidoglycan metabolic process	BP
GO:0000910	cytokinesis	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004175	endopeptidase activity	MF
GO:0004180	carboxypeptidase activity	MF
GO:0004185	serine-type carboxypeptidase activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0006022	aminoglycan metabolic process	BP
GO:0006026	aminoglycan catabolic process	BP
GO:0006027	glycosaminoglycan catabolic process	BP
GO:0006508	proteolysis	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007049	cell cycle	BP
GO:0008144	obsolete drug binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008233	peptidase activity	MF
GO:0008236	serine-type peptidase activity	MF
GO:0008238	exopeptidase activity	MF
GO:0008360	regulation of cell shape	BP
GO:0008658	penicillin binding	MF
GO:0009002	serine-type D-Ala-D-Ala carboxypeptidase activity	MF
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009253	peptidoglycan catabolic process	BP
GO:0009254	peptidoglycan turnover	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0016787	hydrolase activity	MF
GO:0016998	cell wall macromolecule catabolic process	BP
GO:0017171	serine hydrolase activity	MF
GO:0019538	protein metabolic process	BP
GO:0019954	asexual reproduction	BP
GO:0022402	cell cycle process	BP
GO:0022414	reproductive process	BP
GO:0022603	regulation of anatomical structure morphogenesis	BP
GO:0022604	regulation of cell morphogenesis	BP
GO:0030203	glycosaminoglycan metabolic process	BP
GO:0030288	outer membrane-bounded periplasmic space	CC
GO:0030313	cell envelope	CC
GO:0031406	carboxylic acid binding	MF
GO:0031975	envelope	CC
GO:0032505	reproduction of a single-celled organism	BP
GO:0033218	amide binding	MF
GO:0033293	monocarboxylic acid binding	MF
GO:0036094	small molecule binding	MF
GO:0042597	periplasmic space	CC
GO:0043093	FtsZ-dependent cytokinesis	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043177	organic acid binding	MF
GO:0044036	cell wall macromolecule metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044464	obsolete cell part	CC
GO:0045229	external encapsulating structure organization	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051301	cell division	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070008	serine-type exopeptidase activity	MF
GO:0070011	peptidase activity	MF
GO:0071554	cell wall organization or biogenesis	BP
GO:0071555	cell wall organization	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0097159	organic cyclic compound binding	MF
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901136	carbohydrate derivative catabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901681	sulfur compound binding	MF

KEGG Term	Name	Description
map01100	Metabolic pathways	-