PPGR - Gene Detail

Basic Information

Gene ID	CSS0000959.g View in Genome Browser
Position	Chr11:22997619-22997912 (-) 293bp
Gene Type	gene
Gene Description (Protein Product)	"RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex
Organism	Camellia sinensis
Also AS	AT1G34140

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

CSS0043457.g Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

CSS0028322.g component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

CSS0042978.g component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Regulatory gene

CSS0000128.g tesmin tso1-like cxc

CSS0001631.g transcription factor

CSS0001972.g transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0001732	formation of cytoplasmic translation initiation complex	BP
GO:0002181	cytoplasmic translation	BP
GO:0002183	cytoplasmic translational initiation	BP
GO:0002188	translation reinitiation	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003743	translation initiation factor activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005852	eukaryotic translation initiation factor 3 complex	CC
GO:0006412	translation	BP
GO:0006413	translational initiation	BP
GO:0006415	translational termination	BP
GO:0006518	peptide metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008135	translation factor activity, RNA binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0010494	cytoplasmic stress granule	CC
GO:0016043	cellular component organization	BP
GO:0016282	eukaryotic 43S preinitiation complex	CC
GO:0019538	protein metabolic process	BP
GO:0022411	cellular component disassembly	BP
GO:0022607	cellular component assembly	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0022618	ribonucleoprotein complex assembly	BP
GO:0032984	protein-containing complex disassembly	BP
GO:0032991	protein-containing complex	CC
GO:0034622	protein-containing complex assembly	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0035770	ribonucleoprotein granule	CC
GO:0036464	cytoplasmic ribonucleoprotein granule	CC
GO:0043043	peptide biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0043614	multi-eIF complex	CC
GO:0043624	protein-containing complex disassembly	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0065003	protein-containing complex assembly	BP
GO:0070993	translation preinitiation complex	CC
GO:0071540	eukaryotic translation initiation factor 3 complex, eIF3e	CC
GO:0071541	eukaryotic translation initiation factor 3 complex, eIF3m	CC
GO:0071704	organic substance metabolic process	BP
GO:0071826	ribonucleoprotein complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0097159	organic cyclic compound binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1990904	ribonucleoprotein complex	CC