Basic Information
Gene ID
Position
Chr1:100309486-100318489 (-)
9003bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the spermidine spermine synthase family
Organism
Also AS AT5G53120

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CSS0016424.g Belongs to the spermidine spermine synthase family
CSS0044237.g Belongs to the spermidine spermine synthase family
CSS0035621.g Polyamine oxidase
Regulatory gene
CSS0000233.g ABSCISIC ACID-INSENSITIVE 5-like protein
CSS0000938.g Transcription factor
CSS0001216.g transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map01100 Metabolic pathways -
map00480 Glutathione metabolism -
map00330 Arginine and proline metabolism -
map00270 Cysteine and methionine metabolism Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].