PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	CSS0012776.g View in Genome Browser
Position	Chr13:99166895-99174909 (+) 8014bp
Gene Type	gene
Gene Description (Protein Product)	BRCT domain-containing protein
Organism	Camellia sinensis
Also AS	AT4G02110

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	CSS0028723.g serine threonine-protein kinase CSS0020547.g serine threonine-protein kinase CSS0018686.g Fanconi anemia group J protein
Regulatory gene	CSS0004712.g GAGA binding protein-like family CSS0007067.g Protein BASIC PENTACYSTEINE6-like CSS0008658.g Protein BASIC PENTACYSTEINE2-like

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03440	Homologous recombination	Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.