PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	CSS0018108.g View in Genome Browser
Position	Chr12:152343147-152344999 (-) 1852bp
Gene Type	gene
Gene Description (Protein Product)	"Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2)
Organism	Camellia sinensis
Also AS	AT1G64190

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	CSS0020627.g 6-phosphogluconolactonase CSS0024772.g Ribose-5-phosphate isomerase CSS0021335.g Ribose-5-phosphate isomerase
Regulatory gene	CSS0000305.g Zinc finger protein CSS0001087.g ZINC FINGER protein CSS0001631.g transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0001101	response to acid chemical	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005829	cytosol	CC
GO:0005911	cell-cell junction	CC
GO:0006081	cellular aldehyde metabolic process	BP
GO:0006098	pentose-phosphate shunt	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006733	obsolete oxidoreduction coenzyme metabolic process	BP
GO:0006739	NADP metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006970	response to osmotic stress	BP
GO:0008114	phosphogluconate 2-dehydrogenase activity	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009051	pentose-phosphate shunt, oxidative branch	BP
GO:0009117	nucleotide metabolic process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009409	response to cold	BP
GO:0009414	response to water deprivation	BP
GO:0009415	response to water	BP
GO:0009506	plasmodesma	CC
GO:0009507	chloroplast	CC
GO:0009532	plastid stroma	CC
GO:0009536	plastid	CC
GO:0009570	chloroplast stroma	CC
GO:0009628	response to abiotic stimulus	BP
GO:0009651	response to salt stress	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009737	response to abscisic acid	BP
GO:0009743	response to carbohydrate	BP
GO:0009744	response to sucrose	BP
GO:0009746	response to hexose	BP
GO:0009749	response to glucose	BP
GO:0009750	response to fructose	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010035	response to inorganic substance	BP
GO:0010038	response to metal ion	BP
GO:0016020	membrane	CC
GO:0016491	oxidoreductase activity	MF
GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	MF
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	MF
GO:0019362	pyridine nucleotide metabolic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0019682	glyceraldehyde-3-phosphate metabolic process	BP
GO:0019693	ribose phosphate metabolic process	BP
GO:0030054	cell junction	CC
GO:0033993	response to lipid	BP
GO:0034284	response to monosaccharide	BP
GO:0034285	response to disaccharide	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042221	response to chemical	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0046496	nicotinamide nucleotide metabolic process	BP
GO:0046686	response to cadmium ion	BP
GO:0050896	response to stimulus	BP
GO:0051156	glucose 6-phosphate metabolic process	BP
GO:0051186	obsolete cofactor metabolic process	BP
GO:0055044	symplast	CC
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:0072524	pyridine-containing compound metabolic process	BP
GO:0097305	response to alcohol	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901700	response to oxygen-containing compound	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00480	Glutathione metabolism	-
map00030	Pentose phosphate pathway	The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].