PPGR - Gene Detail

Basic Information

Gene ID	CSS0029374.g View in Genome Browser
Position	Chr9:145599338-145618715 (+) 19377bp
Gene Type	gene
Gene Description (Protein Product)	SH3 domain-containing protein
Organism	Camellia sinensis
Also AS	AT4G34660

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

CSS0035066.g Belongs to the ATG8 family

CSS0029668.g Belongs to the ATG8 family

CSS0046438.g U-box domain-containing protein

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000278	mitotic cell cycle	BP
GO:0000280	nuclear division	BP
GO:0000281	mitotic cytokinesis	BP
GO:0000910	cytokinesis	BP
GO:0000911	cytokinesis by cell plate formation	BP
GO:0000919	cell plate assembly	BP
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005768	endosome	CC
GO:0005829	cytosol	CC
GO:0005886	plasma membrane	CC
GO:0006810	transport	BP
GO:0006897	endocytosis	BP
GO:0006898	receptor-mediated endocytosis	BP
GO:0006996	organelle organization	BP
GO:0007049	cell cycle	BP
GO:0008150	biological_process	BP
GO:0009504	cell plate	CC
GO:0009832	plant-type cell wall biogenesis	BP
GO:0009920	cell plate formation involved in plant-type cell wall biogenesis	BP
GO:0009987	cellular process	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016192	vesicle-mediated transport	BP
GO:0022402	cell cycle process	BP
GO:0022607	cellular component assembly	BP
GO:0031410	cytoplasmic vesicle	CC
GO:0031982	vesicle	CC
GO:0032506	cytokinetic process	BP
GO:0042546	cell wall biogenesis	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044085	cellular component biogenesis	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0048285	organelle fission	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051301	cell division	BP
GO:0061640	cytoskeleton-dependent cytokinesis	BP
GO:0071554	cell wall organization or biogenesis	BP
GO:0071669	plant-type cell wall organization or biogenesis	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0072583	clathrin-dependent endocytosis	BP
GO:0097708	intracellular vesicle	CC
GO:0098657	import into cell	BP
GO:0140014	mitotic nuclear division	BP
GO:1902410	mitotic cytokinetic process	BP
GO:1903047	mitotic cell cycle process	BP

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.