Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
CSS0031137.g
View in Genome Browser
Position
Chr7:43667416-43674655 (+)
7239bp
Gene Type
gene
Gene Description (Protein Product)
"The B regulatory subunit might modulate substrate selectivity and catalytic activity
Organism
Camellia sinensis
Also AS AT3G21650

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CSS0037307.g Serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A
CSS0045793.g Serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A
CSS0035466.g Serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A
Regulatory gene
CSS0000233.g ABSCISIC ACID-INSENSITIVE 5-like protein
CSS0000938.g Transcription factor
CSS0001216.g transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000096 sulfur amino acid metabolic process BP
GO:0000902 cell morphogenesis BP
GO:0000904 cell morphogenesis involved in differentiation BP
GO:0002682 regulation of immune system process BP
GO:0002683 negative regulation of immune system process BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003727 single-stranded RNA binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005829 cytosol CC
GO:0006082 organic acid metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006534 cysteine metabolic process BP
GO:0006555 methionine metabolic process BP
GO:0006575 cellular modified amino acid metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006790 sulfur compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006979 response to oxidative stress BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008187 poly-pyrimidine tract binding MF
GO:0008266 poly(U) RNA binding MF
GO:0009058 biosynthetic process BP
GO:0009066 aspartate family amino acid metabolic process BP
GO:0009069 serine family amino acid metabolic process BP
GO:0009116 nucleoside metabolic process BP
GO:0009119 ribonucleoside metabolic process BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009759 indole glucosinolate biosynthetic process BP
GO:0009888 tissue development BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010026 trichome differentiation BP
GO:0010090 trichome morphogenesis BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0016043 cellular component organization BP
GO:0016143 S-glycoside metabolic process BP
GO:0016144 S-glycoside biosynthetic process BP
GO:0017144 xenobiotic metabolic process BP
GO:0018130 heterocycle biosynthetic process BP
GO:0019222 regulation of metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019748 secondary metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0019757 glycosinolate metabolic process BP
GO:0019758 glycosinolate biosynthetic process BP
GO:0019760 glucosinolate metabolic process BP
GO:0019761 glucosinolate biosynthetic process BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030154 cell differentiation BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031347 regulation of defense response BP
GO:0031348 negative regulation of defense response BP
GO:0032502 developmental process BP
GO:0032989 cellular component morphogenesis BP
GO:0033353 S-adenosylmethionine cycle BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042278 purine nucleoside metabolic process BP
GO:0042343 indole glucosinolate metabolic process BP
GO:0042430 indole-containing compound metabolic process BP
GO:0042435 indole-containing compound biosynthetic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044272 sulfur compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044550 secondary metabolite biosynthetic process BP
GO:0045088 regulation of innate immune response BP
GO:0045824 negative regulation of innate immune response BP
GO:0046128 purine ribonucleoside metabolic process BP
GO:0046439 L-cysteine metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046498 S-adenosylhomocysteine metabolic process BP
GO:0046500 S-adenosylmethionine metabolic process BP
GO:0048468 cell development BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050776 regulation of immune response BP
GO:0050777 negative regulation of immune response BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072521 purine-containing compound metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0080183 response to photooxidative stress BP
GO:0090342 obsolete regulation of cell aging BP
GO:0090558 plant epidermis development BP
GO:0090626 plant epidermis morphogenesis BP
GO:0097159 organic cyclic compound binding MF
GO:1900457 regulation of brassinosteroid mediated signaling pathway BP
GO:1900458 negative regulation of brassinosteroid mediated signaling pathway BP
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901137 carbohydrate derivative biosynthetic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901657 glycosyl compound metabolic process BP
GO:1901659 glycosyl compound biosynthetic process BP
GO:2000377 regulation of reactive oxygen species metabolic process BP
KEGG Term Name Description
map03015 mRNA surveillance pathway The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.