Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
CSS0033602.g
View in Genome Browser
Position
Chr15:18587690-18599945 (-)
12255bp
Gene Type
gene
Gene Description (Protein Product)
RNA polymerase II-associated factor 1 homolog
Organism
Camellia sinensis
Also AS AT1G79730

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CSS0040077.g RNA polymerase-associated protein CTR9 homolog
CSS0041762.g FAR1-related protein
CSS0038705.g DNA-directed RNA polymerases II, IV and V subunit
Regulatory gene
CSS0000556.g transcription factor
CSS0000859.g MADS-box transcription factor
CSS0002128.g AP2-like ethylene-responsive transcription factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0006325 chromatin organization BP
GO:0006464 protein modification process BP
GO:0006479 protein methylation BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0008023 transcription elongation factor complex CC
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008213 protein alkylation BP
GO:0009909 regulation of flower development BP
GO:0009910 negative regulation of flower development BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016571 histone methylation BP
GO:0016591 RNA polymerase II, holoenzyme CC
GO:0016593 Cdc73/Paf1 complex CC
GO:0019538 protein metabolic process BP
GO:0030880 RNA polymerase complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032259 methylation BP
GO:0032991 protein-containing complex CC
GO:0036211 protein modification process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0048519 negative regulation of biological process BP
GO:0048580 regulation of post-embryonic development BP
GO:0048581 negative regulation of post-embryonic development BP
GO:0048831 regulation of shoot system development BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0051093 negative regulation of developmental process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051241 negative regulation of multicellular organismal process BP
GO:0051276 chromosome organization BP
GO:0055029 nuclear DNA-directed RNA polymerase complex CC
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC
GO:2000026 regulation of multicellular organismal development BP
GO:2000241 regulation of reproductive process BP
GO:2000242 negative regulation of reproductive process BP