PPGR - Gene Detail

Basic Information

Gene ID	CSS0034348.g View in Genome Browser
Position	Contig503:33822-35346 (+) 1524bp
Gene Type	gene
Gene Description (Protein Product)	"1
Organism	Camellia sinensis
Also AS	AT1G60600

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

CSS0045903.g Geranylgeranyl diphosphate reductase

CSS0047896.g Geranylgeranyl diphosphate reductase

CSS0036336.g Geranylgeranyl diphosphate reductase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0002094	polyprenyltransferase activity	MF
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004659	prenyltransferase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006091	generation of precursor metabolites and energy	BP
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006733	obsolete oxidoreduction coenzyme metabolic process	BP
GO:0006743	ubiquinone metabolic process	BP
GO:0006744	ubiquinone biosynthetic process	BP
GO:0006766	vitamin metabolic process	BP
GO:0006775	fat-soluble vitamin metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009108	obsolete coenzyme biosynthetic process	BP
GO:0009110	vitamin biosynthetic process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009767	photosynthetic electron transport chain	BP
GO:0009772	photosynthetic electron transport in photosystem II	BP
GO:0009987	cellular process	BP
GO:0010236	plastoquinone biosynthetic process	BP
GO:0015979	photosynthesis	BP
GO:0016740	transferase activity	MF
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	MF
GO:0019684	photosynthesis, light reaction	BP
GO:0022900	electron transport chain	BP
GO:0032194	ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	BP
GO:0042180	cellular ketone metabolic process	BP
GO:0042181	ketone biosynthetic process	BP
GO:0042362	fat-soluble vitamin biosynthetic process	BP
GO:0042371	vitamin K biosynthetic process	BP
GO:0042372	phylloquinone biosynthetic process	BP
GO:0042373	vitamin K metabolic process	BP
GO:0042374	phylloquinone metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046428	1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	MF
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901661	quinone metabolic process	BP
GO:1901663	quinone biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00130	Ubiquinone and other terpenoid-quinone biosynthesis	Ubiquinone (UQ), also called coenzyme Q, and plastoquinone (PQ) are electron carriers in oxidative phosphorylation and photosynthesis, respectively. The quinoid nucleus of ubiquinone is derived from the shikimate pathway; 4-hydroxybenzoate is directly formed from chorismate in bacteria, while it can be formed from either chorismate or tyrosine in yeast. The following biosynthesis of terpenoid moiety involves reactions of prenylation, decarboxylation, and three hydroxylations alternating with three methylations. The order of these reactions are somewhat different between bacteria and yeast. Phylloquinone (vitamin K1), menaquinone (vitamin K2), and tocopherol (vitamin E) are fat-soluble vitamins. Phylloquinone is a compound present in all photosynthetic plants serving as a cofactor for photosystem I-mediated electron transport. Menaquinone is an obligatory component of the electron-transfer pathway in bacteria.