Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
CSS0034985.g
View in Genome Browser
Position
Chr3:1148814-1231485 (+)
82671bp
Gene Type
gene
Gene Description (Protein Product)
phototropin
Organism
Camellia sinensis
Also AS AT5G58140

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CSS0047297.g Belongs to the NPH3 family
CSS0049238.g E3 ubiquitin-protein ligase
CSS0041032.g Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Regulatory gene
CSS0000556.g transcription factor
CSS0000859.g MADS-box transcription factor
CSS0002234.g Agamous-like MADS-box protein AGL12

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000166 nucleotide binding MF
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003729 mRNA binding MF
GO:0003824 catalytic activity MF
GO:0004672 protein kinase activity MF
GO:0004674 protein serine/threonine kinase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005794 Golgi apparatus CC
GO:0005886 plasma membrane CC
GO:0006464 protein modification process BP
GO:0006468 protein phosphorylation BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007623 circadian rhythm BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009314 response to radiation BP
GO:0009416 response to light stimulus BP
GO:0009605 response to external stimulus BP
GO:0009606 tropism BP
GO:0009628 response to abiotic stimulus BP
GO:0009637 response to blue light BP
GO:0009638 phototropism BP
GO:0009657 plastid organization BP
GO:0009658 chloroplast organization BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009735 response to cytokinin BP
GO:0009785 blue light signaling pathway BP
GO:0009881 photoreceptor activity MF
GO:0009882 blue light photoreceptor activity MF
GO:0009898 cytoplasmic side of plasma membrane CC
GO:0009902 chloroplast relocation BP
GO:0009903 chloroplast avoidance movement BP
GO:0009904 chloroplast accumulation movement BP
GO:0009986 cell surface CC
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010118 stomatal movement BP
GO:0010119 regulation of stomatal movement BP
GO:0010155 regulation of proton transport BP
GO:0010181 FMN binding MF
GO:0010359 regulation of anion channel activity BP
GO:0010360 negative regulation of anion channel activity BP
GO:0010361 regulation of anion channel activity by blue light BP
GO:0010362 negative regulation of anion channel activity by blue light BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016301 kinase activity MF
GO:0016310 phosphorylation BP
GO:0016740 transferase activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0019538 protein metabolic process BP
GO:0019750 chloroplast localization BP
GO:0022898 regulation of transmembrane transporter activity BP
GO:0023052 signaling BP
GO:0030522 intracellular receptor signaling pathway BP
GO:0032409 regulation of transporter activity BP
GO:0032410 negative regulation of transporter activity BP
GO:0032412 regulation of monoatomic ion transmembrane transporter activity BP
GO:0032413 negative regulation of ion transmembrane transporter activity BP
GO:0032553 ribonucleotide binding MF
GO:0032879 regulation of localization BP
GO:0034762 regulation of transmembrane transport BP
GO:0034763 negative regulation of transmembrane transport BP
GO:0034765 regulation of monoatomic ion transmembrane transport BP
GO:0034766 negative regulation of monoatomic ion transmembrane transport BP
GO:0035556 intracellular signal transduction BP
GO:0036094 small molecule binding MF
GO:0036211 protein modification process BP
GO:0038023 signaling receptor activity MF
GO:0042221 response to chemical BP
GO:0042802 identical protein binding MF
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043269 regulation of monoatomic ion transport BP
GO:0043271 negative regulation of monoatomic ion transport BP
GO:0043412 macromolecule modification BP
GO:0044070 regulation of monoatomic anion transport BP
GO:0044092 negative regulation of molecular function BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0046777 protein autophosphorylation BP
GO:0048037 obsolete cofactor binding MF
GO:0048511 rhythmic process BP
GO:0048519 negative regulation of biological process BP
GO:0050662 obsolete coenzyme binding MF
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051049 regulation of transport BP
GO:0051051 negative regulation of transport BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051644 plastid localization BP
GO:0051649 establishment of localization in cell BP
GO:0051656 establishment of organelle localization BP
GO:0051667 establishment of plastid localization BP
GO:0051716 cellular response to stimulus BP
GO:0060089 molecular transducer activity MF
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0071214 cellular response to abiotic stimulus BP
GO:0071478 cellular response to radiation BP
GO:0071482 cellular response to light stimulus BP
GO:0071483 cellular response to blue light BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:0098552 side of membrane CC
GO:0098562 cytoplasmic side of membrane CC
GO:0104004 cellular response to environmental stimulus BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901265 nucleoside phosphate binding MF
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1903792 negative regulation of monoatomic anion transport BP
GO:1903959 regulation of monoatomic anion transmembrane transport BP
GO:1903960 negative regulation of anion transmembrane transport BP
GO:1904062 regulation of monoatomic cation transmembrane transport BP