PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	CSS0039181.g View in Genome Browser
Position	Chr15:10381725-10382537 (-) 812bp
Gene Type	gene
Gene Description (Protein Product)	Transcription initiation factor TFIID subunit
Organism	Camellia sinensis
Also AS	AT1G17440

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	CSS0047628.g Transcription initiation factor TFIID subunit CSS0039222.g Transcription initiation factor TFIID subunit CSS0041245.g Transcription initiation factor TFIID subunit
Regulatory gene	CSS0000305.g Zinc finger protein CSS0001087.g ZINC FINGER protein CSS0001631.g transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000123	histone acetyltransferase complex	CC
GO:0000124	SAGA complex	CC
GO:0000125	SAGA complex	CC
GO:0000428	DNA-directed RNA polymerase complex	CC
GO:0001085	RNA polymerase II-specific DNA-binding transcription factor binding	MF
GO:0001101	response to acid chemical	BP
GO:0001102	RNA polymerase II-specific DNA-binding transcription factor binding	MF
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003712	transcription coregulator activity	MF
GO:0003713	transcription coactivator activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005667	transcription regulator complex	CC
GO:0005669	transcription factor TFIID complex	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006325	chromatin organization	BP
GO:0006351	DNA-templated transcription	BP
GO:0006352	DNA-templated transcription initiation	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006366	transcription by RNA polymerase II	BP
GO:0006367	transcription initiation at RNA polymerase II promoter	BP
GO:0006464	protein modification process	BP
GO:0006473	protein acetylation	BP
GO:0006475	internal protein amino acid acetylation	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0008134	transcription factor binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009735	response to cytokinin	BP
GO:0009736	cytokinin-activated signaling pathway	BP
GO:0009753	response to jasmonic acid	BP
GO:0009755	hormone-mediated signaling pathway	BP
GO:0009867	jasmonic acid mediated signaling pathway	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009966	regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010104	regulation of ethylene-activated signaling pathway	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010646	regulation of cell communication	BP
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016569	obsolete covalent chromatin modification	BP
GO:0016570	histone modification	BP
GO:0016573	histone acetylation	BP
GO:0016591	RNA polymerase II, holoenzyme	CC
GO:0017025	TBP-class protein binding	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0018193	peptidyl-amino acid modification	BP
GO:0018205	peptidyl-lysine modification	BP
GO:0018393	internal peptidyl-lysine acetylation	BP
GO:0018394	peptidyl-lysine acetylation	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019538	protein metabolic process	BP
GO:0022607	cellular component assembly	BP
GO:0023051	regulation of signaling	BP
GO:0023052	signaling	BP
GO:0030880	RNA polymerase complex	CC
GO:0030914	SAGA complex	CC
GO:0031248	protein acetyltransferase complex	CC
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032774	RNA biosynthetic process	BP
GO:0032870	cellular response to hormone stimulus	BP
GO:0032991	protein-containing complex	CC
GO:0033276	transcription factor TFTC complex	CC
GO:0033613	DNA-binding transcription factor binding	MF
GO:0034622	protein-containing complex assembly	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0036211	protein modification process	BP
GO:0042221	response to chemical	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0043543	protein acylation	BP
GO:0043933	protein-containing complex organization	BP
GO:0043966	histone H3 acetylation	BP
GO:0044085	cellular component biogenesis	BP
GO:0044093	positive regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0044798	transcription regulator complex	CC
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051090	regulation of DNA-binding transcription factor activity	BP
GO:0051091	positive regulation of DNA-binding transcription factor activity	BP
GO:0051123	RNA polymerase II preinitiation complex assembly	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051254	positive regulation of RNA metabolic process	BP
GO:0051276	chromosome organization	BP
GO:0051716	cellular response to stimulus	BP
GO:0055029	nuclear DNA-directed RNA polymerase complex	CC
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061695	transferase complex, transferring phosphorus-containing groups	CC
GO:0065003	protein-containing complex assembly	BP
GO:0065004	protein-DNA complex assembly	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070297	regulation of phosphorelay signal transduction system	BP
GO:0070461	SAGA-type complex	CC
GO:0070887	cellular response to chemical stimulus	BP
GO:0070897	transcription preinitiation complex assembly	BP
GO:0071229	cellular response to acid chemical	BP
GO:0071310	cellular response to organic substance	BP
GO:0071368	cellular response to cytokinin stimulus	BP
GO:0071395	cellular response to jasmonic acid stimulus	BP
GO:0071495	cellular response to endogenous stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0071824	protein-DNA complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090575	RNA polymerase II transcription regulator complex	CC
GO:0097159	organic cyclic compound binding	MF
GO:0097659	nucleic acid-templated transcription	BP
GO:0140110	transcription regulator activity	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1901701	cellular response to oxygen-containing compound	BP
GO:1902493	acetyltransferase complex	CC
GO:1902494	catalytic complex	CC
GO:1902531	regulation of intracellular signal transduction	BP
GO:1902680	positive regulation of RNA biosynthetic process	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903508	positive regulation of nucleic acid-templated transcription	BP
GO:1905368	peptidase complex	CC
GO:1990234	transferase complex	CC
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map03022	Basal transcription factors	-