PPGR - Gene Detail

Basic Information

Gene ID	CSS0040061.g View in Genome Browser
Position	Contig216:184479-193182 (+) 8703bp
Gene Type	gene
Gene Description (Protein Product)	eukaryotic translation initiation factor
Organism	Camellia sinensis
Also AS	AT1G76820

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

CSS0043226.g component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

CSS0047432.g component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

CSS0048991.g Eukaryotic translation initiation factor 2 subunit

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000166	nucleotide binding	MF
GO:0001882	nucleoside binding	MF
GO:0001883	purine nucleoside binding	MF
GO:0002181	cytoplasmic translation	BP
GO:0002183	cytoplasmic translational initiation	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003743	translation initiation factor activity	MF
GO:0003824	catalytic activity	MF
GO:0003924	GTPase activity	MF
GO:0005488	binding	MF
GO:0005525	GTP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006412	translation	BP
GO:0006413	translational initiation	BP
GO:0006518	peptide metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008135	translation factor activity, RNA binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0017076	purine nucleotide binding	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0019001	guanyl nucleotide binding	MF
GO:0019538	protein metabolic process	BP
GO:0032549	ribonucleoside binding	MF
GO:0032550	purine ribonucleoside binding	MF
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032561	guanyl ribonucleotide binding	MF
GO:0032991	protein-containing complex	CC
GO:0033290	eukaryotic 48S preinitiation complex	CC
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0043043	peptide biosynthetic process	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0070993	translation preinitiation complex	CC
GO:0071704	organic substance metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00195	Photosynthesis	Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.