PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	CSS0040726.g View in Genome Browser
Position	Chr7:76117006-76129394 (-) 12388bp
Gene Type	gene
Gene Description (Protein Product)	116 kDa U5 small nuclear ribonucleoprotein
Organism	Camellia sinensis
Also AS	AT1G06220

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	CSS0044190.g pre-mRNA-processing-splicing factor CSS0046632.g U6 snRNA-associated Sm-like protein CSS0040828.g Peptidyl-prolyl cis-trans isomerase
Regulatory gene	CSS0000128.g tesmin tso1-like cxc CSS0002128.g AP2-like ethylene-responsive transcription factor CSS0004278.g B3 domain-containing

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.