PPGR - Gene Detail

Gene ID	CSS0042981.g View in Genome Browser
Position	Chr5:29058833-29060668 (+) 1835bp
Gene Type	gene
Gene Description (Protein Product)	ABC transporter G family member
Organism	Camellia sinensis
Also AS	AT1G53270

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	CSS0048699.g Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family CSS0044386.g lysine histidine transporter CSS0048457.g Lysine histidine transporter
Regulatory gene	CSS0004712.g GAGA binding protein-like family CSS0007067.g Protein BASIC PENTACYSTEINE6-like CSS0008658.g Protein BASIC PENTACYSTEINE2-like

Load All Networks

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005215	transporter activity	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0006810	transport	BP
GO:0008150	biological_process	BP
GO:0015399	primary active transmembrane transporter activity	MF
GO:0015405	ATPase-coupled transmembrane transporter activity	MF
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0022804	active transmembrane transporter activity	MF
GO:0022857	transmembrane transporter activity	MF
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0042623	ATP hydrolysis activity	MF
GO:0042626	ATPase-coupled transmembrane transporter activity	MF
GO:0043492	ATPase-coupled transmembrane transporter activity	MF
GO:0044425	obsolete membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0055085	transmembrane transport	BP
GO:0071944	cell periphery	CC

KEGG Term	Name	Description
map02010	ABC transporters	The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).